PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01727.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 280aa MW: 30261.7 Da PI: 9.2362 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 164.1 | 7.1e-51 | 30 | 186 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaessss 80 aa +kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LG+dk+skt++WLl+ +k+ai+e++ + +++sec e++sss Zmw_sc01727.1.g00130.1.sm.mk 30 AASRKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGYDKASKTVQWLLNTSKAAIQEIMTD--DASSECvEDGSSSL 108 588**************************************************************..66666999999999 PP TCP 81 sasnsssg......................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 s++ ++ + ka+++++++k+++ksa+++ l+ke+rakar+rarertrek+r+++++ Zmw_sc01727.1.g00130.1.sm.mk 109 SVDGKQDPteepggdqqqkgsgcsegkkpaKARRATTTPKPPRKSANAHPVLDKETRAKARERARERTREKHRMRWVK 186 9996666677778888888899*******77777777**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.9E-45 | 32 | 182 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.876 | 33 | 91 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.54 | 162 | 179 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEQPPAPKHD PSNAQGAGGA VSLDTASAAA ASRKDRHSKI CTAGGMRDRR MRLSLDVARK 60 FFALQDMLGY DKASKTVQWL LNTSKAAIQE IMTDDASSEC VEDGSSSLSV DGKQDPTEEP 120 GGDQQQKGSG CSEGKKPAKA RRATTTPKPP RKSANAHPVL DKETRAKARE RARERTREKH 180 RMRWVKLASA IDVEAAAGRD RPSTSNLNHS PSMNMASAAA ELEERCSSTL NNGGRTQQVS 240 MATEPSDMIL TFGNGGYGGI NYCQEQWELG GVVFANSRFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796975.1 | 1e-126 | transcription factor TEOSINTE BRANCHED 1-like | ||||
Swissprot | Q8LN68 | 1e-108 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | A0A346M107 | 1e-155 | A0A346M107_CYNDA; Teosinte branched 1 | ||||
STRING | Pavir.Ia00838.1.p | 1e-129 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |