PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01722.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 250aa    MW: 27057.9 Da    PI: 8.3732
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01722.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.5e-18162196135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Zmw_sc01722.1.g00120.1.sm.mk 162 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 196
                                   *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-16156206IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385160192IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.9E-14160194IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.71E-14160220No hitNo description
CDDcd002021.84E-13161208No hitNo description
PROSITE patternPS003440162187IPR000679Zinc finger, GATA-type
PfamPF003206.5E-16162196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MASQWEAVDL GMGLVHRHTA NTTTMPPAPS PTSMNHYFYG GGGGHTAASS SSFNPSFADD  60
FSIPAVPSEE AAELEWLSNF VDDSYPDMPA GYCYPPEALV AAAQQQQQNN NNKLPPSVTG  120
SRTKRSRSTS AQQRSKNKQN QLPAGPGGDD TNNSEEGGVR RCTHCASEKT PQWRTGPLGP  180
KTLCNACGVR YKSGRLVPEY RPAASPTFVL TQHSNSHRKV MELRHQKELL HLRGTSSSAS  240
STAFRDYGVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658338.18e-65GATA transcription factor 2
SwissprotO497432e-55GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A0A9GYF65e-74A0A0A9GYF6_ARUDO; GATA transcription factor
STRINGGRMZM2G113098_P013e-64(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]