PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01720.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 214aa    MW: 22151.4 Da    PI: 6.6296
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01720.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox361.1e-111243356
                                  HHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox 33 LAkklgLterqVkvWFqNrRakek 56
                                  LA+ lgL+ rqV +WFqNrRa++k
  Zmw_sc01720.1.g00010.1.am.mk  1 LARALGLQPRQVAIWFQNRRARWK 24
                                  89*********************9 PP
2HD-ZIP_I/II85.19.7e-281623293
                   HD-ZIP_I/II 32 lareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                                  lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L +++++L++e+++
  Zmw_sc01720.1.g00010.1.am.mk  1 LARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALLAQNKKLHAEITA 62
                                  89*******************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-10136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-12134IPR009057Homeodomain-like
PfamPF000465.2E-9124IPR001356Homeobox domain
PROSITE patternPS000270124IPR017970Homeobox, conserved site
CDDcd000861.52E-9127No hitNo description
PROSITE profilePS5007113.038126IPR001356Homeobox domain
PfamPF021831.8E-122665IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
LARALGLQPR QVAIWFQNRR ARWKTKQLEK DYDALRRQLD AARAENDALL AQNKKLHAEI  60
TALKGGGGGG GGGAGGGGGR QEAASELINL NVKETEASCS NRSENSSEIN LDISRPAPAA  120
DESTMNSHRP AALPFYASAF GGRSGGGSLD IDQLLQHSHA SAAPTMEIGH GAGADTGAAA  180
AGAGSFGSLL CGGAVVDEQP AFWPWAADGH HNFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11826RRARWKTKQ
26379KGGGGGGGGGAGGGGGR
3140146GGRSGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796230.13e-96homeobox-leucine zipper protein HOX23-like
SwissprotA2Z7345e-73HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL55e-73HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLA0A1E5V6C71e-100A0A1E5V6C7_9POAL; Homeobox-leucine zipper protein HOX23
STRINGPavir.Ib03082.1.p2e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]