PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01702.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 282aa    MW: 30801.7 Da    PI: 10.6046
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01702.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox382.8e-121381682656
                                   -HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  26 saeereeLAkklgLterqVkvWFqNrRakek 56 
                                   s +++ +LA++l+L  rqV vWFqNrRa+ k
  Zmw_sc01702.1.g00130.1.sm.mk 138 SPNQKNDLARRLNLRPRQVEVWFQNRRARTK 168
                                   678999***********************98 PP
2HD-ZIP_I/II828.9e-271252021389
                   HD-ZIP_I/II  13 lLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                                   +LEe  e+++   +p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+  e+Lkr++ +l++en+rL++ev+eLr+
  Zmw_sc01702.1.g00130.1.sm.mk 125 QLEEDDEANSrSESPNQKNDLARRLNLRPRQVEVWFQNRRARTKLKQTEVHREYLKRWCATLTQENRRLQREVAELRA 202
                                   577777777745679*************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.924110170IPR001356Homeobox domain
SMARTSM003899.4E-4112174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-10138168IPR009057Homeodomain-like
SuperFamilySSF466897.35E-10138171IPR009057Homeodomain-like
PfamPF000461.1E-9138168IPR001356Homeobox domain
CDDcd000862.11E-8138171No hitNo description
PROSITE patternPS000270145168IPR017970Homeobox, conserved site
CDDcd146860.00197163202No hitNo description
SMARTSM003404.0E-18170213IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MINTIKQSFL DVGEITAASH ARTGKSLVLD GPGNRPETNR ATLFVGWASS LPKPSHHIGA  60
PLPARPSRRV CLPSPSERPA PAKATFATVP TSAHAGSGED HELVLELGTG TAKRAEQDNQ  120
KTHLQLEEDD EANSRSESPN QKNDLARRLN LRPRQVEVWF QNRRARTKLK QTEVHREYLK  180
RWCATLTQEN RRLQREVAEL RASRTTYPIY YGQPAAGFSS GATRGCPSCG NMAAPYPVIT  240
ALSSSVVAAP PPSVSALFAS SRPFLGPFTV HPVLRRQPSA TS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162170RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952725.11e-54homeobox-leucine zipper protein HOX7
SwissprotQ0E0A61e-39HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7
TrEMBLA0A3L6QJX55e-55A0A3L6QJX5_PANMI; Homeobox-leucine zipper protein HOX7-like
STRINGSi019736m1e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6348422
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]