PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01693.1.g00250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 358aa MW: 39126.9 Da PI: 6.5015 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3e-16 | 31 | 80 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv+ ++++Gg+ +W+ ++ g++R++k+c++rw +yl Zmw_sc01693.1.g00250.1.am.mkhc 31 KGPWTEEEDRTLVEHIQKHGGHvsSWRNLPKAAGLNRCGKSCRLRWTNYL 80 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.1e-17 | 86 | 130 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +E+ l++ ++++lG++ W+tIa ++ gRt++++k++w+++ Zmw_sc01693.1.g00250.1.am.mkhc 86 RGNFTDDEERLIIALHAELGNK-WSTIATHLE-GRTDNEIKNYWNTH 130 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.828 | 26 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.34E-28 | 28 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 30 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-15 | 31 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 32 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-9 | 33 | 80 | No hit | No description |
PROSITE profile | PS51294 | 27.549 | 81 | 135 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-16 | 85 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 86 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.09E-12 | 88 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 88 | 136 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
SPSREKRACR KTSIESMGRS PCCCHDAGVK KGPWTEEEDR TLVEHIQKHG GHVSSWRNLP 60 KAAGLNRCGK SCRLRWTNYL RPDIKRGNFT DDEERLIIAL HAELGNKWST IATHLEGRTD 120 NEIKNYWNTH IRKKLVRMGV DPVTHQRLPP DDILNGALAS PGGLPGTLLC AAASSFRDLD 180 TALRQAQALQ LLLQVVGSSS NLTGSAALLG NYNLPTGNAM LSNVNNSVAP NLQDQMMSIF 240 SPANNRPAAG YYPPCDAGAA NFAEQGMAQQ CLKSSAPSPS CGSPNGELAA DQYCNTTAAL 300 ERPAAYTQEA AATGVDLPAP VQTFTDLLEP REMPNMYSLE EDDRLWDWDD MLHSSFHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 31 | 135 | 7 | 108 | B-MYB |
1h8a_C | 1e-27 | 31 | 135 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105856.1 | 1e-121 | transcription factor MYB2 | ||||
Swissprot | Q9S9Z2 | 9e-66 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A3L6Q4P1 | 1e-121 | A0A3L6Q4P1_PANMI; Transcription factor MYB39 | ||||
STRING | GRMZM2G081557_P01 | 1e-122 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Publications ? help Back to Top | |||
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