PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01693.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 472aa MW: 50632.6 Da PI: 6.7479

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01693.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	193	244	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+l+P + + + + a+i+ A++++k+L+ Zmw_sc01693.1.g00170.1.am.mk 193 QRITHIAVERNRRRQMNEYLAVLRSLMPDS---YVHRGDQASIVSGAIDCVKELE 244 799*************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-17	191	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.84E-13	191	248	No hit	No description
PROSITE profile	PS50888	14.424	192	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-9	193	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-13	194	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-10	198	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MSLELPRMHT HPAVSGFSIA SVVKISWSIR LRGEGDLATH ATGRLKHFLA AAAAPTAGPS 60 TKLALSFTSD SAICMPDSTA AQLTRARALS YAILYTSTID MTLQEALCAP SSDVLIYDTF 120 NAAACAPSAT GSFLVVGNGA TEAMALPVPM EVPVAAPTPA QEAEGETRAV HQGRRKRRRR 180 ERSIKNHEDA ENQRITHIAV ERNRRRQMNE YLAVLRSLMP DSYVHRGDQA SIVSGAIDCV 240 KELEQQLQSL EAQKRALLAA QHQQKRNSMA VERDMAQMPM SNSPADGAAG EKGEEEEEAA 300 PASPPPFSRF FRYPQYVWLH ARPREDGAEE ASRASGVADV EVSVVVDAHA SVRVMAPRRP 360 GQLLKMVAGL QVLGLAVLHL NVTAADAVVL YTLSLKWPLC RGESLGGELG RSIDMAMSAA 420 KGYRDCVEEG CALTAADEIA AAVHHVMCII EAEATTQQRV LAAGVGQTPG LS

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MSLELPRMHT HPAVSGFSIA SVVKISWSIR LRGEGDLATH ATGRLKHFLA AAAAPTAGPS  60
TKLALSFTSD SAICMPDSTA AQLTRARALS YAILYTSTID MTLQEALCAP SSDVLIYDTF  120
NAAACAPSAT GSFLVVGNGA TEAMALPVPM EVPVAAPTPA QEAEGETRAV HQGRRKRRRR  180
ERSIKNHEDA ENQRITHIAV ERNRRRQMNE YLAVLRSLMP DSYVHRGDQA SIVSGAIDCV  240
KELEQQLQSL EAQKRALLAA QHQQKRNSMA VERDMAQMPM SNSPADGAAG EKGEEEEEAA  300
PASPPPFSRF FRYPQYVWLH ARPREDGAEE ASRASGVADV EVSVVVDAHA SVRVMAPRRP  360
GQLLKMVAGL QVLGLAVLHL NVTAADAVVL YTLSLKWPLC RGESLGGELG RSIDMAMSAA  420
KGYRDCVEEG CALTAADEIA AAVHHVMCII EAEATTQQRV LAAGVGQTPG LS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	179	RAVHQGRRKRRRR
2	173	179	RRKRRRR
3	173	180	RRKRRRRE
4	174	178	RKRRR
5	174	181	RKRRRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319605.1	1e-108	transcription factor bHLH96-like
TrEMBL	A0A1B6PMY0	1e-106	A0A1B6PMY0_SORBI; Uncharacterized protein
STRING	Si010485m	4e-99	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3712	36	78