PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01688.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 328aa MW: 35602.3 Da PI: 4.8685

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01688.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.3	9.4e-19	109	158	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a++ +++l+g Zmw_sc01688.1.g00050.1.sm.mkhc 109 HFRGIRQRP-WGKWAAEIRDPQ----KgTRVWLGTFNTAEDAARAYDVEARRLRG 158 69*****.******94....35***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	6.4E-32	108	166	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-35	109	172	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-21	109	167	IPR016177	DNA-binding domain
CDD	cd00018	9.74E-29	109	168	No hit	No description
PROSITE profile	PS51032	23.591	109	166	IPR001471	AP2/ERF domain
Pfam	PF00847	1.9E-11	109	158	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-11	110	121	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-11	132	148	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MCGGAILAEL IPPTRRAASR PVTAGGNLWP ASSENGGRGR DNKKHVAEID DFEAAFDEFD 60 DDFDEVEEDG DYGYDGSRAR PFVFASKPAF SSAHDGRAAR QRKRGSRRHF RGIRQRPWGK 120 WAAEIRDPQK GTRVWLGTFN TAEDAARAYD VEARRLRGSK AKVNFPAAGA RPRRAKARPG 180 PKAQPPPAAA QLASLGGQKK KQEELVAEPE TMMAAFNMDN LLDLTFPAAP PVTVSSFTDS 240 AGSESGAPVK KQRTDDSSDG SATLELTDEL EFDPFMFFQL PYMDGGYESI DSLFAGGEAG 300 QDVNTVNSDV NGAGLWSFDE FPIDGAIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-22	108	166	4	63	ATERF1
3gcc_A	3e-22	108	166	4	63	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269\|PubMed:12913152}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791485.1	1e-118	ethylene-responsive transcription factor 1-like
Refseq	XP_025791486.1	1e-118	ethylene-responsive transcription factor 1-like
Swissprot	Q6K7E6	4e-32	ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBL	A0A0A9VK36	1e-127	A0A0A9VK36_ARUDO; Uncharacterized protein
STRING	Pavir.Ib00526.1.p	1e-126	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7987	30	40

Publications ? help Back to Top
Kim CY, et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4 [PMID:10755311] Koo SC, et al. OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33. Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70 [PMID:19607808] Iwamoto M,Takano M Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice. Biotechnol. Lett., 2011. 33(1): p. 173-8 [PMID:20872166] Serra TS, et al. OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Mol. Biol., 2013. 82(4-5): p. 439-55 [PMID:23703395] Jisha V, et al. Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS ONE, 2015. 10(6): p. e0127831 [PMID:26035591] Lourenço TF, et al. The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant Physiol., 2015. 169(3): p. 2275-87 [PMID:26381316]