PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01683.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bZIP | ||||||||
Protein Properties | Length: 156aa MW: 17451.4 Da PI: 9.9227 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.9 | 2.5e-09 | 4 | 52 | 13 | 61 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 NR +A rs +RK +++ eLe+kv++L++e ++L +l l+ l + Zmw_sc01683.1.g00130.1.sm.mkhc 4 NRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTTGLSA 52 ************************************9999877666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd14703 | 9.40E-18 | 1 | 46 | No hit | No description |
PROSITE profile | PS50217 | 9.438 | 1 | 57 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 5.6E-6 | 2 | 56 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.44E-10 | 2 | 48 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-10 | 4 | 50 | No hit | No description |
Pfam | PF00170 | 9.5E-8 | 4 | 44 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
ILANRQSAAR SKERKIKYTS ELERKVQTLQ TEATTLSAQL TLLQRDTTGL SAENRELKLR 60 LQSMEEQAKL RDALNEALRE EVQRLKIAAG QAANMNGNPF NGGLQQQIPS YFSQQQQMSY 120 QGGHQSQHRN PSHHQGPSNG GQSLGGQFLN DSMDFI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441871.1 | 2e-88 | transcription factor VIP1 | ||||
Swissprot | Q6S4P4 | 1e-44 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A0D3HRQ7 | 6e-88 | A0A0D3HRQ7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | C5YS97 | 4e-87 | C5YS97_SORBI; Uncharacterized protein | ||||
STRING | Sb08g003940.1 | 7e-88 | (Sorghum bicolor) | ||||
STRING | OBART12G03760.1 | 1e-88 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1925 | 38 | 92 |
Publications ? help Back to Top | |||
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