PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01665.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 645aa    MW: 69687.6 Da    PI: 10.5858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01665.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.96.5e-31467560187
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+ tpsdv+k++r+v+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL
  Zmw_sc01665.1.g00110.1.am.mk 467 FDKTVTPSDVGKLNRMVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 547
                                   89*******************************5556799***************************************** PP

                                   -TT-EEEEEE-SS CS
                            B3  75 kegDfvvFkldgr 87 
                                   ++gD+v F+++ +
  Zmw_sc01665.1.g00110.1.am.mk 548 NAGDVVGFYRSAE 560
                                   *********6643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.749314389IPR001471AP2/ERF domain
SMARTSM003804.8E-9347395IPR001471AP2/ERF domain
PfamPF008472.1E-4351381IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-13351389IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-9352389IPR016177DNA-binding domain
CDDcd000183.74E-12354389No hitNo description
Gene3DG3DSA:2.40.330.101.1E-40459585IPR015300DNA-binding pseudobarrel domain
CDDcd100175.93E-28465558No hitNo description
SuperFamilySSF1019361.07E-30465562IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.831467576IPR003340B3 DNA binding domain
SMARTSM010192.1E-23467575IPR003340B3 DNA binding domain
PfamPF023629.9E-28467560IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MEVGMVGGGG GAPPEPEVAG ARWRTNAKSA RAAHFDVRRV LLLLATRGGI GPCGSPRSRA  60
VSCDRFVVAS PMRFTTFTAR PGVVVPYCGA LPVQVVRPSI HVLGDEAAVG IQQTGGPADE  120
FAVQQKNRVE IWGHGLARRG LIRIDSWMEV LQSAAEAGLA LAAVSLGSGF SDVDVTRWEL  180
RTSASPRAVI LQGRNMNPVV GTSAGELETA PRFMRIGRGI PSGFARGVHL AMPWSTLHVK  240
ATLHSLIHQL PHPTHTGGSA VASSPSFPTP MPHRHRVLSA QVSRCNGDMR EHLTKLPVNG  300
LVEVGGAANL DTLNYDARLA THPPTRLYIP LYTPLSYPFH PYAPNIFVQR QKHHRRVWLG  360
TFAGEADAAR AYDVAAQRFR GRDAVTNFRP LADADPDAAA ELRFLASRSK AEVVDMLRKH  420
TYFDELAQNR RAFAASAPTT TSSPLAGDHA AGSSPRPSPV AAREHLFDKT VTPSDVGKLN  480
RMVIPKQHAE KHFPLQLPSA GGESKGVLLN FEDAGGKVWR FRYSYWNSSQ SYVLTKGWSR  540
FVKEKGLNAG DVVGFYRSAE SDVADSKLFI DCKRRPNNTT AASMATPVTV SSPTRVTKAV  600
RLFGVDLLTA PTPESAMTGC KRARDFAATP PQAVFKKPLV ELALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-504605761114B3 domain-containing transcription factor NGA1
5os9_B5e-504605761114B3 domain-containing transcription factor NGA1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203