PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01656.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 283aa    MW: 30854.7 Da    PI: 9.3709
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01656.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.91.4e-32158214158
                       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k rkpylheSRh+hA+rR+Rg+gGrF
  Zmw_sc01656.1.g00070.1.sm.mkhc 158 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKVRKPYLHESRHQHAMRRARGNGGRF 214
                                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.5E-36156217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.14157217IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.1E-28159214IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.2E-25160182IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860162182IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.2E-25191214IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MESRPGGTNL VEPRGQGAAV PPGGVAMQPW WTGGGLGAVS PAVVAPGITP VGGADKAGDD  60
ARGESSEESR RSGESKDGSI SQEKNHATLQ SQMPALVSEY LTPYTQLELN QPIASATYQY  120
PDAYYAGMIG PYGTQPGSHF QIPGLTHSRM PLPLEISEEP VYVNAKQYHG ILRRRQSRAK  180
AELEKKVVKV RKPYLHESRH QHAMRRARGN GGRFLNTKKN DNGTPNGKAD PKKGKVLISI  240
SYAINMHLME HSHTEPHFCF LSGEQNTEQI HVPPDLHLRQ GEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-22158222266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795066.11e-130nuclear transcription factor Y subunit A-9-like
TrEMBLA0A3L6TLH31e-131A0A3L6TLH3_PANMI; Nuclear transcription factor Y subunit A-1-like
STRINGPavir.J08102.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649