PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01654.1.g00140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 373aa    MW: 40614.3 Da    PI: 6.8311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01654.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-172774148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Zmw_sc01654.1.g00140.1.am.mk 27 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 74
                                  89********************************************97 PP

2Myb_DNA-binding53.55.5e-1780123146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Zmw_sc01654.1.g00140.1.am.mk  80 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 123
                                   7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1992274IPR017930Myb domain
SuperFamilySSF466897.49E-3124121IPR009057Homeodomain-like
SMARTSM007171.2E-132676IPR001005SANT/Myb domain
PfamPF002496.5E-152774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-232881IPR009057Homeodomain-like
CDDcd001673.27E-112974No hitNo description
PROSITE profilePS5129426.28175129IPR017930Myb domain
SMARTSM007171.5E-1579127IPR001005SANT/Myb domain
PfamPF002497.4E-1680123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2482128IPR009057Homeodomain-like
CDDcd001679.14E-1384123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSQIRKGAMA VASSKQRQQE EEMELRRGPW TLEEDNLLMN YIACHGEGRW NLLARCSGLK  60
RTGKSCRLRW LNYLKPDIKR GNLTPEEQLL ILELHSKWGN RWSRIAQHLP GRTDNEIKNY  120
WRTRVQKQAR QLRVDANSPV FRDAVRCYWM PRLLEKMAAT TAHHNSHVEL AAVPLPLHPA  180
ASIGDVMHMG SSSPIHHGSQ SQLHDATNVP AESGGGGGGY QQRYYYHEVV DPSPSTSTTS  240
GSGSTTAAAL PPVPCFSELS WVDQQCYGGG DLGARTGAFD FAALGSLGLD GLDLGPADCD  300
YSDTTLLDYL SSAYTGSAAT MMILDSSGGG TGTGNGATDD GAYYGGPTTP WRTEDLCQTT  360
ARKLGDHQWG GGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26241281104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455261.11e-146transcription factor MYB2
TrEMBLA0A1E5VU101e-149A0A1E5VU10_9POAL; Transcription factor MYB108
STRINGPavir.Ea00660.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330