PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01654.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 373aa MW: 40614.3 Da PI: 6.8311 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Zmw_sc01654.1.g00140.1.am.mk 27 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 74 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.5e-17 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Zmw_sc01654.1.g00140.1.am.mk 80 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 123 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.199 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-31 | 24 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-15 | 27 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-23 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.27E-11 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 26.281 | 75 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-16 | 80 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-24 | 82 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.14E-13 | 84 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009686 | Biological Process | gibberellin biosynthetic process | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MSQIRKGAMA VASSKQRQQE EEMELRRGPW TLEEDNLLMN YIACHGEGRW NLLARCSGLK 60 RTGKSCRLRW LNYLKPDIKR GNLTPEEQLL ILELHSKWGN RWSRIAQHLP GRTDNEIKNY 120 WRTRVQKQAR QLRVDANSPV FRDAVRCYWM PRLLEKMAAT TAHHNSHVEL AAVPLPLHPA 180 ASIGDVMHMG SSSPIHHGSQ SQLHDATNVP AESGGGGGGY QQRYYYHEVV DPSPSTSTTS 240 GSGSTTAAAL PPVPCFSELS WVDQQCYGGG DLGARTGAFD FAALGSLGLD GLDLGPADCD 300 YSDTTLLDYL SSAYTGSAAT MMILDSSGGG TGTGNGATDD GAYYGGPTTP WRTEDLCQTT 360 ARKLGDHQWG GGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-26 | 24 | 128 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00216 | DAP | Transfer from AT1G68320 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455261.1 | 1e-146 | transcription factor MYB2 | ||||
TrEMBL | A0A1E5VU10 | 1e-149 | A0A1E5VU10_9POAL; Transcription factor MYB108 | ||||
STRING | Pavir.Ea00660.1.p | 1e-158 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |