PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01653.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TALE | ||||||||
Protein Properties | Length: 491aa MW: 52990.6 Da PI: 7.7317 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.6 | 4.8e-09 | 233 | 270 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Zmw_sc01653.1.g00200.1.am.mk 233 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 270 664459******************************88 PP | |||||||
2 | BELL | 71.5 | 1.4e-23 | 110 | 164 | 18 | 72 |
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +d+rY++y+eq++ v++ Feavag +a Yt+lA+++iSrhFr+L+d i+ q+ Zmw_sc01653.1.g00200.1.am.mk 110 LLDRRYRRYCEQMRSVAGGFEAVAGERAASAYTALASRTISRHFRNLRDGIVAQL 164 579*************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.9E-6 | 31 | 162 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-20 | 106 | 160 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 211 | 274 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.56E-12 | 214 | 275 | No hit | No description |
SMART | SM00389 | 6.6E-9 | 214 | 278 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-17 | 215 | 281 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-28 | 217 | 280 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.1E-18 | 231 | 270 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MVAGRVHLRL GQGRVPFPGP RPSLLETSIP LPFFRYLLSL HEACWPGPLP SRPAFQFPVT 60 PVSAQRHDTG SASLLLFFSA CCSTASPLRM PIPCHSILNA SAHTTQFLLL LDRRYRRYCE 120 QMRSVAGGFE AVAGERAASA YTALASRTIS RHFRNLRDGI VAQLQAARKA LGEKDVGVRG 180 MTCGETPRLR VLDQCIRQQK ALNLQAGMME SQPWRPQRGL PERAVTILRA WLFEHFLHPY 240 PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY VEEMKGEQQH DDGGGSSGGG 300 HVNPNPSISE ASELAYNVGR QHGVSETADG GSNNGIDRKP TREQLLHDAG SLAAVVSVGS 360 GVACAGPGGG ARLLESFGVM DHLDFDAYDD DGHHQAAGGF GSVSLTLGLQ QHSGSRGESG 420 GVNIAFGAPP SSAHHGGYLF AAPGHQQMEG GDHHQYVQLG AAMDGGEAPQ GQEHYRNLSA 480 AGFHLLRDLA G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 3e-17 | 220 | 278 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 3e-17 | 220 | 278 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985907.1 | 1e-160 | homeobox protein BEL1 homolog | ||||
Refseq | XP_012698473.1 | 1e-160 | homeobox protein BEL1 homolog | ||||
Refseq | XP_012698474.1 | 1e-160 | homeobox protein BEL1 homolog | ||||
TrEMBL | A0A1E5UVC1 | 1e-164 | A0A1E5UVC1_9POAL; Homeobox protein BEL1-like protein | ||||
STRING | Si034720m | 1e-160 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 |