PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01648.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 348aa    MW: 39021.7 Da    PI: 7.2042
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01648.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.45.6e-1451891856
                                  HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                   F+ +++p++++r+ ++++lgL+ rq+k+WFqNrR+ +k
  Zmw_sc01648.1.g00090.1.sm.mk 51 IFKDCPHPDENQRAVMSRELGLEPRQIKFWFQNRRTHMK 89
                                  599********************************9988 PP
2START65.12.1e-2121132972164
                                   T-TT-S....EEEEEEEECTT........................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-E CS
                         START  72 Wdetla....kaetlevissg........................galqlmvaelqalsplvp.RdfvfvRyirqlgagdw 123
                                   W e ++    ka t++v+ +g                         ++++ + el  ++plvp R+f f+Ry++q ++g w
  Zmw_sc01648.1.g00090.1.sm.mk 211 WMEVFPgivsKAHTVDVLVNGiggrnesliminnncvmmttqvtnDVVTQVYEELHTMTPLVPtREFSFLRYCKQIEQGLW 291
                                   6666666666666666666666666666666666666666666656777778888888*********************** PP

                                   EEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
                         START 124 vivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                                   ++vdvS d + +     +  R+++lpSg+li ++sng+skv
  Zmw_sc01648.1.g00090.1.sm.mk 292 AVVDVSMDGQHYGV---PPSRSRRLPSGCLIADMSNGYSKV 329
                                   ********999987...467999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.59E-13994IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-181096IPR009057Homeodomain-like
SMARTSM003893.0E-81495IPR001356Homeobox domain
CDDcd000868.99E-141692No hitNo description
PfamPF000462.1E-115189IPR001356Homeobox domain
PROSITE profilePS5007113.0055291IPR001356Homeobox domain
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PROSITE profilePS5084817.62210330IPR002913START domain
PfamPF018522.0E-16247329IPR002913START domain
SuperFamilySSF559611.65E-13252330No hitNo description
PROSITE patternPS001970331339IPR0060582Fe-2S ferredoxin, iron-sulphur binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDFGDEPEGS SSQRRRKGYH RHTPRQIQQL EAPCGTVLIA SPAIAVIDVM IFKDCPHPDE  60
NQRAVMSREL GLEPRQIKFW FQNRRTHMKA QHERADNCFL RTENDKIRCE NISMREALRN  120
VICPNCGGPP VAEDYFDEHK LRMENASLKE ELERISSFTS KHLGRSFMPM PPMPTMPASG  180
LDLSVGTMSA PALDLDLLGS GSTVSCVTNK WMEVFPGIVS KAHTVDVLVN GIGGRNESLI  240
MINNNCVMMT TQVTNDVVTQ VYEELHTMTP LVPTREFSFL RYCKQIEQGL WAVVDVSMDG  300
QHYGVPPSRS RRLPSGCLIA DMSNGYSKVS CAKADCSTCT RFVLFARS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399989.11e-127homeobox-leucine zipper protein ROC8
RefseqXP_020399990.11e-127homeobox-leucine zipper protein ROC8
SwissprotQ69T581e-99ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A1D6NSI31e-126A0A1D6NSI3_MAIZE; Homeobox-leucine zipper protein HDG11
TrEMBLG2J5T11e-126G2J5T1_MAIZE; Homeodomain leucine zipper family IV protein
TrEMBLI1Q5R51e-126I1Q5R5_ORYGL; Uncharacterized protein
STRINGORGLA06G0247800.11e-127(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4240423