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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc01646.1.g00060.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 336aa MW: 36599.6 Da PI: 10.3035 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 46 | 1.2e-14 | 93 | 137 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+eE+ ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
Zmw_sc01646.1.g00060.1.sm.mkhc 93 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 137
8*******************************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 18.33 | 86 | 142 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 2.73E-17 | 87 | 142 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 7.1E-18 | 89 | 141 | IPR006447 | Myb domain, plants |
| SMART | SM00717 | 1.1E-11 | 90 | 140 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 3.4E-12 | 93 | 136 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 2.74E-10 | 93 | 138 | No hit | No description |
| Pfam | PF00249 | 1.9E-12 | 93 | 137 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 336 aa Download sequence Send to blast |
MARDSRPGAM RLFGVTIAPA PEVDPSNQDP SPNPPLAARE DVMRKCKSMG NLAAVAAASV 60 DGSGAGDGYH SDDGLMQLSG KRRRAQERKK AVPWTEEEHR TFLAGLEKLG KGDWRGIAKN 120 FVTTRTPTQV ASHAQKYFFR QTNRNKKRRR SSLFDMMPGD ALPVPNCHIL PSSGTKVHDV 180 VAMTKQLQNS KLEVVSSSNT GNVESQVERN LPPIPPFKPT SKDSIFSKLN LMERWRTPFP 240 FRPIPRGLEG TSSIPATANI ATMATSSIPA TANIATMTSE TNMAECAIAF LSPKIDPSSP 300 SLPEAGYPEE KKDLELTFGP PSQQNMTNIS SKNAIR |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001339748.1 | 1e-142 | uncharacterized protein LOC110467540 | ||||
| TrEMBL | A0A1E5VMR7 | 1e-147 | A0A1E5VMR7_9POAL; Transcription factor DIVARICATA | ||||
| STRING | GRMZM2G108892_P01 | 1e-142 | (Zea mays) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP5858 | 36 | 52 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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