PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01645.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LSD | ||||||||
Protein Properties | Length: 139aa MW: 15200.7 Da PI: 9.8424 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 29.5 | 1.2e-09 | 38 | 61 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC t+L Y rGA+++RC++C t Zmw_sc01645.1.g00130.1.sm.mkhc 38 CNGCPTMLVYNRGATNIRCPNCRT 61 **********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 5.7E-10 | 36 | 63 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.9E-9 | 38 | 61 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 0.0012 | 74 | 103 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.5E-6 | 77 | 101 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MILTSESQLQ ACLISCTANK KNLSCKQKRT REMSELVCNG CPTMLVYNRG ATNIRCPNCR 60 TLNSTRSGAN QMGQLQCGRC PTTLAYQLGA STVGCPRCRH VNPVRDARPQ TVLVENPKTL 120 DEKGKLVSNV AVGVASWKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320000.1 | 2e-56 | protein LOL4 isoform X3 | ||||
Refseq | XP_021320001.1 | 2e-56 | protein LOL4 isoform X3 | ||||
Swissprot | Q84UR0 | 6e-51 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | C5YMW9 | 7e-54 | C5YMW9_SORBI; Uncharacterized protein | ||||
STRING | Sb07g002500.1 | 1e-54 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Publications ? help Back to Top | |||
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