PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01645.1.g00130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LSD
Protein Properties Length: 139aa    MW: 15200.7 Da    PI: 9.8424
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01645.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.51.2e-093861124
                         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                                    C+gC t+L Y rGA+++RC++C t
  Zmw_sc01645.1.g00130.1.sm.mkhc 38 CNGCPTMLVYNRGATNIRCPNCRT 61
                                    **********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.7E-103663IPR005735Zinc finger, LSD1-type
PfamPF069433.9E-93861IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010530.001274103IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-677101IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MILTSESQLQ ACLISCTANK KNLSCKQKRT REMSELVCNG CPTMLVYNRG ATNIRCPNCR  60
TLNSTRSGAN QMGQLQCGRC PTTLAYQLGA STVGCPRCRH VNPVRDARPQ TVLVENPKTL  120
DEKGKLVSNV AVGVASWKR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320000.12e-56protein LOL4 isoform X3
RefseqXP_021320001.12e-56protein LOL4 isoform X3
SwissprotQ84UR06e-51LOL4_ORYSJ; Protein LOL4
TrEMBLC5YMW97e-54C5YMW9_SORBI; Uncharacterized protein
STRINGSb07g002500.11e-54(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]