PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01627.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 27319.1 Da PI: 9.5766 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.1 | 3e-18 | 98 | 152 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +++ LA++l+L rqV vWFqNrRa+ k Zmw_sc01627.1.g00040.1.am.mk 98 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALANQLNLRPRQVEVWFQNRRARTK 152 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.2 | 6.1e-40 | 98 | 186 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+dye Lkr++++l++en++L+ Zmw_sc01627.1.g00040.1.am.mk 98 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALANQLNLRPRQVEVWFQNRRARTKLKQTEVDYELLKRCCETLTKENRNLH 178 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLre 89 +e +Lr+ Zmw_sc01627.1.g00040.1.am.mk 179 RELLQLRA 186 ******94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-19 | 84 | 155 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-18 | 85 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.973 | 94 | 154 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-15 | 96 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.41E-15 | 98 | 155 | No hit | No description |
Pfam | PF00046 | 1.3E-15 | 98 | 152 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 129 | 152 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 9.5E-10 | 154 | 187 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.2E-16 | 154 | 197 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEHEDVGLAL GLSLSSGHHG PKERRPSPST QLRALEPSLS LSIKADDGSQ TAQVRPLIGA 60 VKRELPVEED EYGPMDRAFY SAASPAAAAD DDEGCNSRKK LRLTKEQSAL LEDRFKEHST 120 LNPKQKVALA NQLNLRPRQV EVWFQNRRAR TKLKQTEVDY ELLKRCCETL TKENRNLHRE 180 LLQLRALTHP HRAAFFMPAT ALSVCPSCER LAGAPSATAV VADRQPKAAG TRRAAPLFST 240 FTKSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 102 | SRKKLRL |
2 | 146 | 154 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983488.1 | 1e-117 | homeobox-leucine zipper protein HOX15 | ||||
Swissprot | A2Z4C4 | 1e-76 | HOX15_ORYSI; Homeobox-leucine zipper protein HOX15 | ||||
TrEMBL | K4AE82 | 1e-116 | K4AE82_SETIT; Uncharacterized protein | ||||
STRING | Si037189m | 1e-117 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |