PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01621.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 369aa MW: 39859.1 Da PI: 8.4529

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01621.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.2	3.8e-54	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeel+v+yL++++ ++++++ +i++vdiyk++PwdLp+k++ ++kewyfFs+rd+ky++g r+nra+ Zmw_sc01621.1.g00180.1.am.mkhc 9 LPPGFRFHPTDEELIVHYLRNRAGSSPIPV-AIIADVDIYKFNPWDLPSKAAYGDKEWYFFSPRDRKYPNGIRPNRAAG 86 79**************************.88***********888889********************* PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+dk+++s+ +ge vg+kk Lvfykgr pkg+kt+W+mheyrl Zmw_sc01621.1.g00180.1.am.mkhc 87 SGYWKATGTDKPIHSTtTGESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 136 **********9978999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-65	3	169	IPR003441	NAC domain
PROSITE profile	PS51005	62.609	9	169	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	10	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MIMANTAMLP PGFRFHPTDE ELIVHYLRNR AGSSPIPVAI IADVDIYKFN PWDLPSKAAY 60 GDKEWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH STTTGESVGV KKALVFYKGR 120 PPKGTKTNWI MHEYRLAADA NAGHAYRPMK FRNASMRLDD WVLCRIYMKT SHAASPMAVP 180 PLFDHEQDEP CGFDETSYAT SSAGMILPGA AAGSFPMQQD AAAGIQTMPR ILSISELLND 240 YPLAPFFDDG GVQDTARLDQ QHHHAALLGH PVASHLLVNN GDNSMSGQLL LANATAATSA 300 AGDGVAAGIK RKRSELESGA SALASHQAAA AKKPNGSCFG ATFQTGNGLQ GSLNQLGHQM 360 LLHPNMGMH

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MIMANTAMLP PGFRFHPTDE ELIVHYLRNR AGSSPIPVAI IADVDIYKFN PWDLPSKAAY  60
GDKEWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH STTTGESVGV KKALVFYKGR  120
PPKGTKTNWI MHEYRLAADA NAGHAYRPMK FRNASMRLDD WVLCRIYMKT SHAASPMAVP  180
PLFDHEQDEP CGFDETSYAT SSAGMILPGA AAGSFPMQQD AAAGIQTMPR ILSISELLND  240
YPLAPFFDDG GVQDTARLDQ QHHHAALLGH PVASHLLVNN GDNSMSGQLL LANATAATSA  300
AGDGVAAGIK RKRSELESGA SALASHQAAA AKKPNGSCFG ATFQTGNGLQ GSLNQLGHQM  360
LLHPNMGMH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-73	9	173	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-73	9	173	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-73	9	173	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-73	9	173	17	169	NO APICAL MERISTEM PROTEIN
3swm_A	2e-73	9	173	20	172	NAC domain-containing protein 19
3swm_B	2e-73	9	173	20	172	NAC domain-containing protein 19
3swm_C	2e-73	9	173	20	172	NAC domain-containing protein 19
3swm_D	2e-73	9	173	20	172	NAC domain-containing protein 19
3swp_A	2e-73	9	173	20	172	NAC domain-containing protein 19
3swp_B	2e-73	9	173	20	172	NAC domain-containing protein 19
3swp_C	2e-73	9	173	20	172	NAC domain-containing protein 19
3swp_D	2e-73	9	173	20	172	NAC domain-containing protein 19
4dul_A	2e-73	9	173	17	169	NAC domain-containing protein 19
4dul_B	2e-73	9	173	17	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798103.1	0.0	NAC domain-containing protein 10-like
Swissprot	Q8H4S4	1e-82	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A3G2LN22	0.0	A0A3G2LN22_9POAL; NAC transcription factor
STRING	Pavir.Ia03443.1.p	1e-178	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]