PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01620.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 27736.6 Da PI: 10.966 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.1 | 6.3e-11 | 5 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ + ++++G g +W + + + ++ +c+srw++yl Zmw_sc01620.1.g00110.1.am.mk 5 KGKWSKEEDRLIRNHIEKHGIGrSWQALSTLQP---CGRSCRSRWLNYL 50 79******************999**********...***********97 PP | |||||||
2 | Myb_DNA-binding | 37.7 | 4.8e-12 | 57 | 100 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T+ Ed+++ + ++G+ W+ I++ ++ gRt+ +k++w++ Zmw_sc01620.1.g00110.1.am.mk 57 GNFTPAEDKIICEMYSKMGSC-WSVISAQLP-GRTDLAVKNYWNST 100 89*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.502 | 1 | 50 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-23 | 3 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-8 | 4 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-9 | 5 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-17 | 6 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.29E-8 | 7 | 50 | No hit | No description |
PROSITE profile | PS51294 | 19.027 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-12 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-11 | 57 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-22 | 58 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.03E-9 | 58 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MVMKKGKWSK EEDRLIRNHI EKHGIGRSWQ ALSTLQPCGR SCRSRWLNYL RPGLKHGNFT 60 PAEDKIICEM YSKMGSCWSV ISAQLPGRTD LAVKNYWNST LKKRFRPAAR TAAFARRRPH 120 PSPTASTSDA GTPARDLQLV IHSDESSTAG SSCAQPILPS SPTSVKAVHP LGPVGAGREP 180 IEAVPVRVSA PVRTDVGGAA SDDANGAATT GKAWSDRWDG HGHHLRAHVT PPSGLHGPGA 240 GLHMRVRRHP QLLALV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-22 | 3 | 105 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661280.1 | 1e-76 | transcription factor RAX2 | ||||
TrEMBL | A0A368SIM7 | 3e-75 | A0A368SIM7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia01569.1.p | 6e-71 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 |