PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01613.1.g00280.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 316aa MW: 34883.4 Da PI: 5.7324

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01613.1.g00280.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.7	7.9e-18	78	162	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY++YA ++GF v+++ks+ + + g + + +vC+k+g+ +e+ + r++ +t+C+a+++ ++ dg +++ Zmw_sc01613.1.g00280.1.sm.mkhc 78 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNKWGNGKEDACY-----QARPTAKTNCQATVVARLLGDGLLHLM 150 6***************9998.6777************9999.....999******************** PP FAR1 80 kleleHnHelap 91 +++leHnH+l+p Zmw_sc01613.1.g00280.1.sm.mkhc 151 DVSLEHNHTLNP 162 *******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-15	78	162	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MEMDSNPGEE LTFPGNLDDD DDGEDISPGS KELAAMVEAA AETVDLDATA ATAACAPDGD 60 DRTPRDGMVF KSYEEVLNFY KRYALRTGFG VCVKKSSFTK AGLCRRLVLV CNKWGNGKED 120 ACYQARPTAK TNCQATVVAR LLGDGLLHLM DVSLEHNHTL NPSAARFLRC YKTLPSGSDT 180 LNKKYECLRL VEIGMASHEK YQLAARFLLD IQKTLLDDNL CRELEQKLTP SERAIANGDN 240 HAHPGSSEGG PAKKRRGRPP KKGKEISMDS MFGQPTSAAE QTRVQWMYPN IFPEAESGMC 300 CSEREKVEAY TQWPAK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559160.1	2e-92	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_010235331.1	2e-92	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_024312384.1	2e-92	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1E5VBV0	1e-136	A0A1E5VBV0_9POAL; Putative ion channel CASTOR
TrEMBL	A0A3L6S590	1e-141	A0A3L6S590_PANMI; Protein FAR1-RELATED SEQUENCE 6-like
STRING	BRADI1G01990.2	7e-92	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967