PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01610.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 513aa MW: 55114.9 Da PI: 9.2707

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01610.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	4.1e-13	191	241	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ h ++Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq Zmw_sc01610.1.g00010.1.am.mk 191 KMLHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 241 57799*********************9...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.33E-13	187	245	No hit	No description
PROSITE profile	PS50888	15.046	189	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-17	191	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-10	191	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-12	191	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-11	195	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MSPGWQFIEC PLPCCIGAVT LLRPAAALAP PAAFIILPGQ ARAGCAHNQY TGTTHTRRSR 60 SSRQAYVLLR RAPHFRPMGD GPCELLVDGR CDRLRHVSDA EDLFSILRTW EECTNGVPGG 120 ASAAESASAF RQTCTGGPVA AVGRPSTTGS SRRRSSVADE DKVGGAPMQK KQKGAAPPAL 180 QALDDDDGVA KMLHIAVERN RRKQMNEHLA VLRSLMPCFY VKRGDQASII GGVVDYIKEL 240 QQVLRLLEAK KDRKAYADQV LSPRPGAGAS PRPLVKSTPP ISPRLAVPIS PRTPSRPGSP 300 YNLPSCGAGG RLPHPAAAAY MMATSPDVTP TPTSSSWCSS CNHSWHDYRQ QNYPPQPQYL 360 PTLDSIVTEL VAHASASRPA LVPDVKVEFA GPNLVLKTVS HRAPGQALKI IAALESLSLE 420 ILHVSVSTVD ETMVHSFTIK IGIECELSAE ELVQEIQRTF YPRHPSPLAA RKASSSQPSQ 480 PPSLSLPASG LPHPNPSYKP GIQRSLPENP SHP

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MSPGWQFIEC PLPCCIGAVT LLRPAAALAP PAAFIILPGQ ARAGCAHNQY TGTTHTRRSR  60
SSRQAYVLLR RAPHFRPMGD GPCELLVDGR CDRLRHVSDA EDLFSILRTW EECTNGVPGG  120
ASAAESASAF RQTCTGGPVA AVGRPSTTGS SRRRSSVADE DKVGGAPMQK KQKGAAPPAL  180
QALDDDDGVA KMLHIAVERN RRKQMNEHLA VLRSLMPCFY VKRGDQASII GGVVDYIKEL  240
QQVLRLLEAK KDRKAYADQV LSPRPGAGAS PRPLVKSTPP ISPRLAVPIS PRTPSRPGSP  300
YNLPSCGAGG RLPHPAAAAY MMATSPDVTP TPTSSSWCSS CNHSWHDYRQ QNYPPQPQYL  360
PTLDSIVTEL VAHASASRPA LVPDVKVEFA GPNLVLKTVS HRAPGQALKI IAALESLSLE  420
ILHVSVSTVD ETMVHSFTIK IGIECELSAE ELVQEIQRTF YPRHPSPLAA RKASSSQPSQ  480
PPSLSLPASG LPHPNPSYKP GIQRSLPENP SHP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	172	RRRSSVADEDKVGGAPMQKKQK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799200.1	1e-153	transcription factor SPEECHLESS-like
TrEMBL	A0A3L6QHE7	1e-153	A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRING	Pavir.Ab01030.1.p	1e-147	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3484	35	77