PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01608.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 363aa    MW: 39439.8 Da    PI: 10.5974
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01608.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.1e-16197249254
                                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa 
  Zmw_sc01608.1.g00080.1.sm.mkhc 197 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRAS 249
                                     788899*********************************************96 PP
2HD-ZIP_I/II114.94.9e-37197290191
                     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA....RtktkqlEkdyeaLkraydalke 75 
                                     +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRA    Rtk+kq+E+d+e+Lkr++++l+e
  Zmw_sc01608.1.g00080.1.sm.mkhc 197 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRAsrarRTKLKQTEVDCEFLKRCCETLTE 275
                                     69*************************************************988889********************** PP

                     HD-ZIP_I/II  76 enerLekeveeLreel 91 
                                     en+rL++e +eLr +l
  Zmw_sc01608.1.g00080.1.sm.mkhc 276 ENRRLQRELQELR-AL 290
                                     ************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-17186247IPR009057Homeodomain-like
SuperFamilySSF466898.55E-17190249IPR009057Homeodomain-like
PROSITE profilePS5007116.52193253IPR001356Homeobox domain
SMARTSM003891.2E-14195257IPR001356Homeobox domain
CDDcd000864.51E-13197255No hitNo description
PfamPF000464.7E-14197249IPR001356Homeobox domain
CDDcd146860.00539244289No hitNo description
PfamPF021839.3E-11257291IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-23257300IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MIFSQRQRGR STRVRRGKAT AWCGKKDLVG TWEKKARHGW QRLVPAASLP SLLASIGKKG  60
KAGLRPALVW VEKQEEKPPP CLRRVPAAAA GRSSAHRVDE QAVEDVHLSD AGLALGLSLG  120
GGGGASSEAA RHSPTSSRPR RASPCALEPS LTLSMPDEAT APTAERVEEA ETTERASSTA  180
AAAQGAGAED DDDGSTRKKL RLTKEQSALL EDRFKEHSTL NPKQKVALAK QLNLRPRQVE  240
VWFQNRRASR ARRTKLKQTE VDCEFLKRCC ETLTEENRRL QRELQELRAL KFATPSAAAA  300
APGVPAPPPF YMQLPAATLT ICPSCDRLGG PGATAKADPD RPKARTTTTQ HHFFNPFTHS  360
AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201TRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797738.11e-103homeobox-leucine zipper protein HOX19-like isoform X1
SwissprotA2XE769e-93HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL49e-93HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A2S3ISP91e-102A0A2S3ISP9_9POAL; Uncharacterized protein
TrEMBLA0A2T7CFD71e-102A0A2T7CFD7_9POAL; Uncharacterized protein
STRINGMLOC_60848.42e-99(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698