PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01607.1.g00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 264aa MW: 28698.9 Da PI: 7.0113 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.6 | 3.6e-30 | 121 | 174 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Zmw_sc01607.1.g00180.1.am.mk 121 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 174 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-19 | 118 | 178 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.799 | 118 | 177 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-31 | 118 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-23 | 122 | 174 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.1E-8 | 124 | 173 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGEEAADDLD LELLGGDDED ERVMEWERGL PGSDELTPLS QPLVPPGLAA AFRIAPEPGR 60 TRLDVHRASA ATVSRLRRAS SSSSESSFPT VAAKADEAAD SSANNKGEAN NNNNSTSTSK 120 RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYVKRMQ 180 GLSNEGPSPS DHIFASTPVP QALVHEVPAP YAGGAAMYHH HQHGPMGVAV GMMPSSYHQQ 240 QNGGYGVSSS SYHHYQQHHH HANK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-34 | 121 | 177 | 1 | 57 | Transcription factor LUX |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817497.1 | 1e-110 | transcription factor PCL1 | ||||
Swissprot | Q94DH3 | 4e-91 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | A0A2T7DB31 | 1e-111 | A0A2T7DB31_9POAL; Uncharacterized protein | ||||
STRING | Si002653m | 1e-101 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |