PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01607.1.g00180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 264aa    MW: 28698.9 Da    PI: 7.0113
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01607.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.63.6e-30121174155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Zmw_sc01607.1.g00180.1.am.mk 121 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 174
                                   59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-19118178IPR009057Homeodomain-like
PROSITE profilePS5129410.799118177IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-31118179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-23122174IPR006447Myb domain, plants
PfamPF002494.1E-8124173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGEEAADDLD LELLGGDDED ERVMEWERGL PGSDELTPLS QPLVPPGLAA AFRIAPEPGR  60
TRLDVHRASA ATVSRLRRAS SSSSESSFPT VAAKADEAAD SSANNKGEAN NNNNSTSTSK  120
RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYVKRMQ  180
GLSNEGPSPS DHIFASTPVP QALVHEVPAP YAGGAAMYHH HQHGPMGVAV GMMPSSYHQQ  240
QNGGYGVSSS SYHHYQQHHH HANK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-34121177157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817497.11e-110transcription factor PCL1
SwissprotQ94DH34e-91PCL1_ORYSJ; Transcription factor PCL1
TrEMBLA0A2T7DB311e-111A0A2T7DB31_9POAL; Uncharacterized protein
STRINGSi002653m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105