PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01604.1.g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 309aa MW: 33601.3 Da PI: 4.9423 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.2 | 9.2e-11 | 234 | 274 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Zmw_sc01604.1.g00170.1.am.mkhc 234 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 274 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.25 | 224 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-14 | 227 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-12 | 229 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 230 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.62E-12 | 233 | 278 | No hit | No description |
Pfam | PF00010 | 3.7E-8 | 234 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MESSEASWHS FDPSAAMEDS DAMAQLLGVQ YFGNEQQKQP AGVYWPGQDA DQYCGGLAPY 60 YYTQQHLNSG ASYDEHGYFG GGTVAMAGDF FVPGEDMADP SFILDLNLEF EDQDGGGKPS 120 PACKRKLELE QKDEISTTGI VPNKKRGRPS TATPAPTKGK TARKSQKAAA SVQGNNHDES 180 NGILQSSSNH MSDDDSLEMT ACSNVSSASK KSSGRAKATA ERGAATDPQS LYARKRRERI 240 NERLKILQNL VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDLWMFAP IAYNGVNVGL 300 DLKISPPQQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661366.2 | 1e-137 | transcription factor bHLH54 | ||||
TrEMBL | A0A368SUB2 | 1e-136 | A0A368SUB2_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia04640.1.p | 1e-139 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11680 | 28 | 32 |