PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01602.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bZIP | ||||||||
Protein Properties | Length: 159aa MW: 17747.7 Da PI: 9.5766 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.7 | 2.9e-09 | 7 | 55 | 13 | 61 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 NR +A rs +RK +++ eLe+kv++L++e ++L +l l+ l + Zmw_sc01602.1.g00120.1.sm.mkhc 7 NRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTTGLSA 55 ************************************9999877666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd14703 | 3.55E-18 | 2 | 49 | No hit | No description |
SuperFamily | SSF57959 | 6.47E-10 | 4 | 51 | No hit | No description |
SMART | SM00338 | 5.6E-6 | 5 | 59 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.5E-10 | 6 | 53 | No hit | No description |
Pfam | PF00170 | 1.2E-7 | 6 | 53 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.393 | 7 | 60 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MDTILANRQS AARSKERKIK YTSELERKVQ TLQTEATTLS AQLTLLQRDT TGLSAENREL 60 KLRLQSMEEH AKLRDALNEA LREEVQRLKI AAGQAANMNG NPFNGGLQQQ IPSYFSQQQQ 120 MSYQGGHQSQ HRNPSHHQGP SNGGQSLGGQ SLNDSMDFI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441871.1 | 1e-88 | transcription factor VIP1 | ||||
Swissprot | Q6S4P4 | 1e-43 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A0D3HRQ7 | 4e-88 | A0A0D3HRQ7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | C5YS97 | 2e-87 | C5YS97_SORBI; Uncharacterized protein | ||||
STRING | Sb08g003940.1 | 4e-88 | (Sorghum bicolor) | ||||
STRING | OBART12G03760.1 | 7e-89 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1925 | 38 | 92 |
Publications ? help Back to Top | |||
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