PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01600.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 352aa MW: 38597.9 Da PI: 7.312

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01600.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	28	85	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++p+ ++r++L +++ +++ +q+kvWFqNrR ++k+ Zmw_sc01600.1.g00130.1.sm.mkhc 28 YVRYTPEQVEALERVYAECPKPTSARRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85 6789***************************************************996 PP
2	START	56.1	1.2e-18	273	333	140	200
TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHT CS START 140 ssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatl 200 +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++l++l++s+++ ++k++ a l Zmw_sc01600.1.g00130.1.sm.mkhc 273 QQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLQPLYESSRVVAQKMTAAYL 333 479***************************************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-19	7	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.564	22	86	IPR001356	Homeobox domain
SMART	SM00389	1.7E-16	24	90	IPR001356	Homeobox domain
CDD	cd00086	1.51E-16	27	87	No hit	No description
SuperFamily	SSF46689	5.99E-17	27	88	IPR009057	Homeodomain-like
Pfam	PF00046	1.2E-16	28	85	IPR001356	Homeobox domain
CDD	cd14686	4.93E-5	79	118	No hit	No description
SuperFamily	SSF55961	1.09E-17	164	319	No hit	No description
SMART	SM00234	0.0073	164	339	IPR002913	START domain
Pfam	PF01852	1.9E-4	165	253	IPR002913	START domain
PROSITE profile	PS50848	10.49	255	321	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	9.6E-5	273	315	IPR023393	START-like domain
Pfam	PF01852	6.4E-16	273	333	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MAAAVAMRSG SSDGGGGYEN GGMDTGKYVR YTPEQVEALE RVYAECPKPT SARRQQLLRE 60 CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLS AMNRLLMEEN ERLQKQVSQL 120 VQENAYMKQQ LQNVQNPSLA NDSESNVATP ANLRDASSPS GLLSIAEETL TEFVSKATGT 180 AIDWPGPDSF GIVSVSHGCR GVAARACGLV NLEPTKIVEI LKDRPSWFRD CRSLEVFTMF 240 PAGNGGTIEL VYMQVCERSL SGSGGGQSAA SPQQFVRAEM LPSGYLVRPC EGGGSIVHIV 300 DHLDLEAWSV PEVLQPLYES SRVVAQKMTA AYLLSQFGAI TFRPLLAELH GT

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MAAAVAMRSG SSDGGGGYEN GGMDTGKYVR YTPEQVEALE RVYAECPKPT SARRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLS AMNRLLMEEN ERLQKQVSQL  120
VQENAYMKQQ LQNVQNPSLA NDSESNVATP ANLRDASSPS GLLSIAEETL TEFVSKATGT  180
AIDWPGPDSF GIVSVSHGCR GVAARACGLV NLEPTKIVEI LKDRPSWFRD CRSLEVFTMF  240
PAGNGGTIEL VYMQVCERSL SGSGGGQSAA SPQQFVRAEM LPSGYLVRPC EGGGSIVHIV  300
DHLDLEAWSV PEVLQPLYES SRVVAQKMTA AYLLSQFGAI TFRPLLAELH GT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269\|PubMed:17804793}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649248.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX10
Swissprot	A2XBL9	0.0	HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
Swissprot	Q6TAQ6	0.0	HOX10_ORYSJ; Homeobox-leucine zipper protein HOX10
TrEMBL	A0A1E5V2R5	0.0	A0A1E5V2R5_9POAL; Homeobox-leucine zipper protein HOX10
STRING	OB03G10760.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP374	38	197

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825]