PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01600.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 625aa    MW: 68067.4 Da    PI: 6.8549
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01600.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-24123224199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+++
  Zmw_sc01600.1.g00080.1.sm.mkhc 123 FAKTLTQSDANNGGGFSVPRYCAETIlpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQK 199
                                     89****************************996555555..8999********************************** PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD++vF   +++ +el+v+++r+
  Zmw_sc01600.1.g00080.1.sm.mkhc 200 KLVAGDSIVFL--RTEHGELCVGIRRA 224
                                     ***********..55999*******97 PP
2Auxin_resp87.82.1e-29279347168
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsd 68 
                                     aa+ a+  ++FevvY+Prast+eFvvk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ 
  Zmw_sc01600.1.g00080.1.sm.mkhc 279 AASLAARCQPFEVVYYPRASTPEFVVKAALVQNAMRIQWCPGMRFKMAFETEDSSRISWfMGTIASVQV 347
                                     67889999**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-36114226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-29118226IPR015300DNA-binding pseudobarrel domain
CDDcd100175.84E-22121223No hitNo description
PROSITE profilePS5086312.929123225IPR003340B3 DNA binding domain
PfamPF023624.3E-22123224IPR003340B3 DNA binding domain
SMARTSM010191.9E-21123225IPR003340B3 DNA binding domain
PfamPF065075.2E-24279347IPR010525Auxin response factor
PROSITE profilePS5174518.307530608IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MKEAAEERGL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAQGGGGGG GAADLAVAVG  60
PRALPALVLC CVAGVRFLAD PETDEVFAKI RLVPVAPGEA DFRDEHDELG GDPAEARDKL  120
PSFAKTLTQS DANNGGGFSV PRYCAETILP KLDYRADPPV QTVLAKDVHG EVWKFRHIYR  180
GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RTEHGELCVG IRRAKRVSFG GMESMSGWNA  240
PGYGAFSAFM KEEENKLMKG AGGYTRGRGK VKIADVVDAA SLAARCQPFE VVYYPRASTP  300
EFVVKAALVQ NAMRIQWCPG MRFKMAFETE DSSRISWFMG TIASVQVTWD EPDLLQNVKC  360
VNPWLVELVS SIPPIHLGPF SPPRKKLRVP QHPDFPFDGQ LLNPIFRGNP LGPSNSPLCC  420
FPDNAPAGIQ GARHAQFGLS LTDHQLNRLG PEKSDDRKKP HIMLFGKPIL TEQQMNSRGS  480
SETLSPNTTG NSSSNGSVPK AANVSDGSGS SICVGFTSQG HEASELGLEA GHCKVFMESE  540
DVGRTIDVSV FASYEELYGQ LADMFGIEKA EIISQLRYHD AAGAVKHAGD EPFSDFMKVV  600
RRLTIIEGSE GRLQKPLMEC VVERV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-651037151392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982839.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLK4A6M00.0K4A6M0_SETIT; Auxin response factor
STRINGSi034525m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]