PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01591.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 241aa MW: 26421.8 Da PI: 9.9071 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.8 | 2.9e-29 | 72 | 125 | 1 | 54 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 k rlrWt eLHerFveav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQ R Zmw_sc01591.1.g00090.1.sm.mk 72 KSRLRWTLELHERFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQVQR 125 68*************************************************877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.165 | 69 | 129 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.7E-15 | 70 | 126 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-27 | 70 | 126 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-23 | 72 | 126 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-7 | 74 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.3E-9 | 120 | 148 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MEFQFLSEQL GIAITDNEES PRLDDIYDTP PPQLSALPVS SCSNQSIQNP GSPVKVQLNS 60 SRSSSGSVAT NKSRLRWTLE LHERFVEAVN KLDGPEKATP KGVLKLMKVE GLTIYHVKSH 120 LQVQRQLQLR IEEHAKYLQK LLEEQQKTGN TSPPKTLSKT QAESPESVSK ESGESKAGNS 180 SPPSSKKRVP DVDMESNLLA GSKRTKVQVF KFEVILQLGY GSSSPSGSVR TVAKARKGGD 240 H |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-22 | 72 | 130 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-22 | 72 | 130 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-22 | 72 | 130 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-22 | 72 | 130 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-22 | 72 | 130 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-22 | 72 | 130 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-22 | 72 | 130 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-22 | 72 | 130 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q6YXZ4}. | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812859.1 | 1e-90 | protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Refseq | XP_025812860.1 | 1e-90 | protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Refseq | XP_025812862.1 | 1e-90 | protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Refseq | XP_025812863.1 | 1e-90 | protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Swissprot | A2X0Q0 | 6e-75 | PHR3_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Swissprot | Q6YXZ4 | 6e-75 | PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3 | ||||
TrEMBL | A0A2S3HGL4 | 3e-89 | A0A2S3HGL4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J27649.1.p | 1e-86 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4526 | 37 | 69 |
Publications ? help Back to Top | |||
---|---|---|---|
|