PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01589.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 380aa MW: 40478.1 Da PI: 10.5052

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01589.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.9	2.2e-13	239	282	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe +v+ L++ N +L+k+ Zmw_sc01589.1.g00050.1.sm.mk 239 RRQRRMIKNRESAARSRARKQAYTMELEAEVQMLKEINAELQKK 282 79*************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.7E-11	235	301	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.496	237	282	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-11	239	282	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.7E-14	239	282	No hit	No description
CDD	cd14707	4.80E-25	239	291	No hit	No description
Pfam	PF00170	7.8E-12	239	282	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	242	257	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MDPKDGERRG PLARQGSIYS LTFDEFQSTL GGMAGGGLGK DFGSMNMDEL LRSIWTAEES 60 QAMASASGSG TAALGAGDDG ALQRQGSLTL PRTLSVKTVD EPTLGEMTLE EFFVRAGVVR 120 ENPAAAGFPA PIQAVNNGSS IFFGNFGGAA SDTGAGAMGF APVGIGDPSA MGNGLMPGMA 180 GMGGAAVTVS PVDTSVAQLD SVGKGNSDLS SPMAPLPYPF EGVIRGRRSG AGVEKVVERR 240 QRRMIKNRES AARSRARKQA YTMELEAEVQ MLKEINAELQ KKQVLEAVSN PYAQKKRCLR 300 RTLTGPCLPG QSLSRCVNST RFCAVILHYP YGTGDRLLKL IAVRKPDRRT TWVDRVSDSA 360 SGQRRKGRRL FSRRPRAAKP

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MDPKDGERRG PLARQGSIYS LTFDEFQSTL GGMAGGGLGK DFGSMNMDEL LRSIWTAEES  60
QAMASASGSG TAALGAGDDG ALQRQGSLTL PRTLSVKTVD EPTLGEMTLE EFFVRAGVVR  120
ENPAAAGFPA PIQAVNNGSS IFFGNFGGAA SDTGAGAMGF APVGIGDPSA MGNGLMPGMA  180
GMGGAAVTVS PVDTSVAQLD SVGKGNSDLS SPMAPLPYPF EGVIRGRRSG AGVEKVVERR  240
QRRMIKNRES AARSRARKQA YTMELEAEVQ MLKEINAELQ KKQVLEAVSN PYAQKKRCLR  300
RTLTGPCLPG QSLSRCVNST RFCAVILHYP YGTGDRLLKL IAVRKPDRRT TWVDRVSDSA  360
SGQRRKGRRL FSRRPRAAKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	362	368	QRRKGRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973666.1	1e-151	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	1e-125	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	K3YIB0	1e-149	K3YIB0_SETIT; Uncharacterized protein
STRING	Si013904m	1e-135	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]