PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01589.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 346aa    MW: 37518.5 Da    PI: 11.0626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01589.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-08267307954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Zmw_sc01589.1.g00020.1.am.mk 267 ARVRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 307
                                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12263318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-14263320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5268307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.68E-6281312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSLPSKKTLA DDRLGTAGHN NVQAAVMHRR EAKQASSGSI IRHHAAAIRI LSPEFISRRW  60
GSDQGRPAGR RTERACAPAR WGSGPFMPVR VGRTSTDQRT GVLAAVDHVQ SFGDRSLWST  120
QLELMNAMLQ LEQLTAFADH GAMMMPSTPP SPCVQAPHYF TSSVPHMSGG TNVRAAYHDQ  180
SSQQVTPPSS CNSSSKRSSE HTAQQAPPPP PPCASGDGGG DAVGSSAMRE MIFRVAALQP  240
VNIEPEMVRP PKRRNVRIST DPQSVAARVR RERISERIRI LQRLVPGGTK MDTASMLDEA  300
IHYVKFLKTQ VQSLERAAAA SGRRPAMPHE DNGAVAYTTA GRMHGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248253RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683432.12e-81transcription factor HEC1
SwissprotQ9SND42e-40HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A0A8YXS61e-98A0A0A8YXS6_ARUDO; Uncharacterized protein
STRINGPavir.Fa00680.1.p1e-82(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]