PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01578.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BBR-BPC
Protein Properties Length: 381aa    MW: 41795.1 Da    PI: 10.109
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01578.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind33.61.2e-101115187
                     GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki............rernlalsekkaavaerd.......... 57 
                                   mdddg    rn+g+y+     k nlglqlms +a +rd+k             ++  l+ +++++++++ +          
  Zmw_sc01578.1.g00060.1.sm.mk   1 MDDDGGLGiRNWGFYDIV---KGNLGLQLMSPVApDRDTKSllpnstflqnhgHHDALNQHHPQHSHHPGEygggrasgdl 78 
                                   999999999******987...9*********9999*****9999999888844444444444455555555********** PP

                     GAGA_bind  58 ........maflqrdkalae.rnkalverdnkllalllv 87 
                                           m+f++++++l+  r+++++  ++k+++  + 
  Zmw_sc01578.1.g00060.1.sm.mk  79 ptepqsihMDFAHNEAWLHAsRHQHVH--EQKIIHARPF 115
                                   *******************93444444..5555555544 PP
2GAGA_bind252.91.9e-7715936394292
                     GAGA_bind  94 alpvgvqvlsgtksidslqq.lse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk 167
                                   ++p+g+++ s+ +++ +++q + +      pql+++ +   +e+   ++ ++e ++ +++++ +kkrqr+++pk++kakk+
  Zmw_sc01578.1.g00060.1.sm.mk 159 QHPTGYKMRSDERHTLQMRQtQAQaqpqtqPQLQPPEASPCKED-GASPALVEDHSMVRNEPPVKKRQRSQQPKSPKAKKP 238
                                   56777777665555444444233355444466766666644444.455666666778888888999*************** PP

                     GAGA_bind 168 kkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                                   kk   +++ + ++++  +r++ +kks+++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCtttiS+yPLP++t
  Zmw_sc01578.1.g00060.1.sm.mk 239 KK-AIVPRGDGAPNRPAPRARGPKKSVGMVINGMDLDLSGIPTPVCSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMNT 318
                                   **.77888888888877**************************************************************** PP

                     GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydl.snpvDLkdhWAkH 292
                                   krrg RiagrKm qgafkk+LekL++eGy+l +np+DLk++WAkH
  Zmw_sc01578.1.g00060.1.sm.mk 319 KRRGVRIAGRKMTQGAFKKVLEKLTGEGYNLiNNPIDLKTFWAKH 363
                                   ******************************8689*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.8E-991363IPR010409GAGA-binding transcriptional activator
SMARTSM012263.6E-1411363IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDDDGGLGIR NWGFYDIVKG NLGLQLMSPV APDRDTKSLL PNSTFLQNHG HHDALNQHHP  60
QHSHHPGEYG GGRASGDLPT EPQSIHMDFA HNEAWLHASR HQHVHEQKII HARPFGPEQK  120
IVHAHPFGPE QKVIHAHPFG PAGHVGHPGH GGHPGHVRQH PTGYKMRSDE RHTLQMRQTQ  180
AQAQPQTQPQ LQPPEASPCK EDGASPALVE DHSMVRNEPP VKKRQRSQQP KSPKAKKPKK  240
AIVPRGDGAP NRPAPRARGP KKSVGMVING MDLDLSGIPT PVCSCTGAPQ QCYRWGAGGW  300
QSACCTTTIS TYPLPMNTKR RGVRIAGRKM TQGAFKKVLE KLTGEGYNLI NNPIDLKTFW  360
AKHEHDGGVQ RASTAGHPSD V
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.11e-148protein Barley B recombinant
RefseqXP_021309578.11e-148protein Barley B recombinant
SwissprotQ8GUC31e-124BBR_HORVU; Protein Barley B recombinant
TrEMBLC5X4B51e-146C5X4B5_SORBI; Uncharacterized protein
STRINGSb02g009750.11e-147(Sorghum bicolor)
STRINGSb02g009782.11e-147(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697