PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01577.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 267aa    MW: 29426.7 Da    PI: 4.6698
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01577.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-2076129356
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     k++++t+eq++ Le+ Fe+++++  e+++eLA++lg+  rqV vWFqNrRa++k
  Zmw_sc01577.1.g00110.1.sm.mkhc  76 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 129
                                     56789************************************************9 PP
2HD-ZIP_I/II132.12.1e-4275167193
                     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 
                                     ekkrrl++eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal+++++ 
  Zmw_sc01577.1.g00110.1.sm.mkhc  75 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDFDRLKAAYDALAADHQG 153
                                     69***************************************************************************** PP

                     HD-ZIP_I/II  80 LekeveeLreelke 93 
                                     L +++++Lr+++++
  Zmw_sc01577.1.g00110.1.sm.mkhc 154 LLADNDRLRAQVTS 167
                                     *********99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.34E-1970133IPR009057Homeodomain-like
PROSITE profilePS5007118.23671131IPR001356Homeobox domain
SMARTSM003894.6E-1974135IPR001356Homeobox domain
PfamPF000462.1E-1776129IPR001356Homeobox domain
CDDcd000861.86E-1876132No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2177137IPR009057Homeodomain-like
PRINTSPR000314.2E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000314.2E-6111127IPR000047Helix-turn-helix motif
PfamPF021836.0E-16131173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDPGRMGFDS GGARRGGGPQ MLLFGGGGSA NSNGFIRGVP MAVLGRDDDA HVGKRPFFTT  60
HEELIEEYYD EQAPEKKRRL TAEQVQMLER SFEEENKLEP ERKTELARRL GMAPRQVAVW  120
FQNRRARWKT KQLETDFDRL KAAYDALAAD HQGLLADNDR LRAQVTSLTE KLQGKVTSPL  180
VTNAAQEVDH LGDHTAVSDT EKLLAQQLKE ALGTGDCTIY GALSSEEEDG GVVSDEGCGF  240
VDFTDTLFAV GPTAEGQLGN MASWFWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973433.11e-133homeobox-leucine zipper protein HOX5
SwissprotQ6ZA743e-90HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
SwissprotQ9XH363e-90HOX5_ORYSI; Homeobox-leucine zipper protein HOX5
TrEMBLB4FLB11e-136B4FLB1_MAIZE; HB transcription factor
STRINGSi014228m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]