PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01576.1.g00230.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 535aa    MW: 57970.4 Da    PI: 9.2189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01576.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-14270317148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g W++eEd++l d + ++G g+W++ +++ g+ R +k+c++rw +yl
  Zmw_sc01576.1.g00230.1.am.mk 270 KGLWSPEEDQKLRDFIVRYGHGCWSALPAKAGLQRNGKSCRLRWINYL 317
                                   678*******************************************97 PP
2Myb_DNA-binding52.79.5e-17324368248
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   g ++ eE+e   +++++lG++ W+ Iar+++ gRt++++k++w++yl
  Zmw_sc01576.1.g00230.1.am.mk 324 GMFSREEEETVMNLHAKLGNK-WSHIARHLP-GRTDNEVKNYWNSYL 368
                                   56999****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-20262320IPR009057Homeodomain-like
PROSITE profilePS5129414.645265317IPR017930Myb domain
SuperFamilySSF466897.7E-28268364IPR009057Homeodomain-like
SMARTSM007174.0E-11269319IPR001005SANT/Myb domain
PfamPF002491.3E-12270317IPR001005SANT/Myb domain
CDDcd001675.10E-10273317No hitNo description
PROSITE profilePS5129425.468318372IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-25321371IPR009057Homeodomain-like
SMARTSM007173.5E-14322370IPR001005SANT/Myb domain
PfamPF002494.6E-15324368IPR001005SANT/Myb domain
CDDcd001676.58E-12326368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MRVETKHPKQ VRAGSHRDVK PGGSRLPDHD PKFIGPDAMH SLRMCKLSSD SKRAPTPPAQ  60
NARKLTMRAR AARGRGAWPH GGDDDPGRPE AEADAADPPL PLTPFWRFGA GQRLGSGPGS  120
PCSCRSPARE TEPNQRGGDG ARQRRNAVFA VRKSEIFLSF SATGGGLLDT EMFASSLRTG  180
KIIRRSLILK MPMRRRVATA TAPWLRKQAV DICPIKPSAQ PALAVLTPTQ TDTTVQAHPQ  240
SPPFSSATPR SQSYHHPLAV PCAPKVQCRK GLWSPEEDQK LRDFIVRYGH GCWSALPAKA  300
GLQRNGKSCR LRWINYLRPG LKHGMFSREE EETVMNLHAK LGNKWSHIAR HLPGRTDNEV  360
KNYWNSYLKK RVEGRQASEC AADSDVSGST NTSGTGQERL NRPASSESSP VESSSADDSS  420
CLTVTEPGAP AAAAALRPHA PVLPRVMFAD WLDMDYGTNL MAPGLDHAGV FDVMNGRSPT  480
QGSVQVDGPC GAVDSLHGLD DGGVCWDFDA AADQMDVQGA GFCDLLSMSE FLGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-262703737109B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976342.11e-153transcription factor LAF1
TrEMBLA0A1E5W1231e-151A0A1E5W123_9POAL; Transcription factor LAF1
TrEMBLK3YDJ91e-151K3YDJ9_SETIT; Uncharacterized protein
STRINGSi012304m1e-152(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109