PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01571.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 430aa MW: 45556.8 Da PI: 9.5703

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01571.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.4	1.3e-30	188	264	6	81
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 rh ++hTkv+gR+RR+Rl caar+ L++eLG++ d++ti WLlqq++pa++++tgt++ + ++ +++++ Zmw_sc01571.1.g00090.1.am.mk 188 PRHRDRHTKVEGRGRRIRLAEACAARIARLTRELGHKNDGETIRWLLQQSEPAVIAATGTGTVPXXAAvADGDQQPD 264 69**********************************************************88888444222222221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.8E-24	190	255	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	21.597	190	244	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MVQKIIETEQ KSKSRTRPKT GAAKSKQRRR IEEAGARDES ASSPNPISLG VAXXXISSGP 60 VGRLPLNPTL RDPLSQRRSK NRSRELAQRR APPNQNKGAE SKKPERETKA RLAPIRSPLE 120 SRAPDMGEED VAAFYHAAGN GTAVTDAAVV GIDAMGSSEA HGSLMPKPEP APVEFLGELQ 180 VANPRPAPRH RDRHTKVEGR GRRIRLAEAC AARIARLTRE LGHKNDGETI RWLLQQSEPA 240 VIAATGTGTV PXXAAVADGD QQPDPKRRRK LQPTRAAAAG ATAPPLTSTP TAYYPVVADP 300 LLQGNGGGAI STSSGLAPAS VPTPPPGAIP FLAIPAPGPG ATIDGKQMMK PTAVWMVPPQ 360 AGAGGAANQP THYWAFPTNP ELFGNFQQQA VYDAGQLVDG GESQHQQLEG HQDGEGEEED 420 IALTESSSEE

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MVQKIIETEQ KSKSRTRPKT GAAKSKQRRR IEEAGARDES ASSPNPISLG VAXXXISSGP  60
VGRLPLNPTL RDPLSQRRSK NRSRELAQRR APPNQNKGAE SKKPERETKA RLAPIRSPLE  120
SRAPDMGEED VAAFYHAAGN GTAVTDAAVV GIDAMGSSEA HGSLMPKPEP APVEFLGELQ  180
VANPRPAPRH RDRHTKVEGR GRRIRLAEAC AARIARLTRE LGHKNDGETI RWLLQQSEPA  240
VIAATGTGTV PXXAAVADGD QQPDPKRRRK LQPTRAAAAG ATAPPLTSTP TAYYPVVADP  300
LLQGNGGGAI STSSGLAPAS VPTPPPGAIP FLAIPAPGPG ATIDGKQMMK PTAVWMVPPQ  360
AGAGGAANQP THYWAFPTNP ELFGNFQQQA VYDAGQLVDG GESQHQQLEG HQDGEGEEED  420
IALTESSSEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	270	PKRRRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803340.1	1e-124	transcription factor PCF2-like
Swissprot	A2YXQ1	1e-70	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	1e-70	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A2T7EUU1	1e-123	A0A2T7EUU1_9POAL; Uncharacterized protein
STRING	Sb02g030260.1	1e-117	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]