PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01566.1.g00230.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 818aa MW: 86768.8 Da PI: 10.8278

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01566.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	70.7	2.7e-22	395	457	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC +dls ak y+ rhkvC +h+k+pvv+v+g+eqrfCqqCs sCrrrLa+hnerrr++ Zmw_sc01566.1.g00230.1.am.mkhc 395 RCQVEGCGVDLSGAKPYYCRHKVCCIHAKTPVVVVAGIEQRFCQQCS-------------SCRRRLAGHNERRRRP 457 6*******************************************9.............9***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.1E-20	391	442	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	22.769	393	457	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-28	394	460	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-15	396	456	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MATVNRRARP AVKLRQETAP HSRSCERWQL ATASELSLDV TPANSHARTS APVIQLACAF 60 SRHTDGFERR LRYWFLDQAS RGGRCGRSNG AKEGPYRQPR CGKPTQGHRR CRGAVRAQWP 120 LPPLFTSLAR AVARPPVAGR LAFLSLSPVR VTVDYTGASP VRAHEGIAVA TVRRVKTARE 180 VHKARLPTKP QCPRNTIAKE RVGAASGSSR GARKESLLVV VEASSVGVRV RRGRKETAAN 240 HWRTRAHTAP HTRSVILRAA PPLLSPLLAS LSPSYAALNS LFHSLLSPAK RGQRGRAGKI 300 ATTLPQQGSE AQQLAAMDTG GSGGGGGDDV HGLKFGKKIY FEQDSTAGGS REAAGGGRKG 360 KSAAAGSSGG PASTAPTAAG AVAAATPPRA ATPPRCQVEG CGVDLSGAKP YYCRHKVCCI 420 HAKTPVVVVA GIEQRFCQQC SSCRRRLAGH NERRRRPPPG PLNSRFGRLA SSFQEPGRFR 480 SFLLDFSYPR VSSGAMDAWP GVQPGDRMSS AIQWQGNHDQ LRPRSGAVAG YGDHAYIGPG 540 GSVAGTSSMH PAFELPHGGC VAGVATDSCC ALSLLSTQPW DSTQSGSHHH RSPAMSTASA 600 FEGSNPVPVS PSVMASSYAA ASTWSGSRVH ESARNLHHHH PLSQEGDLHM VHPGSVHHGH 660 FSGELELALQ GSGEPSNPPQ VDHGSSGAFG HSSNAVNCAP PPPLHLPHRC FPSPETRPGA 720 SPSPPLARFV QLPSAAVSEP LLGIPSSPVF ASSLRPVDEK TLTRPSGKLR QRHCGHVEGG 780 AERGEERAIT NELEKDDGLE NCVPSVRYAI WWLIRGIS

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MATVNRRARP AVKLRQETAP HSRSCERWQL ATASELSLDV TPANSHARTS APVIQLACAF  60
SRHTDGFERR LRYWFLDQAS RGGRCGRSNG AKEGPYRQPR CGKPTQGHRR CRGAVRAQWP  120
LPPLFTSLAR AVARPPVAGR LAFLSLSPVR VTVDYTGASP VRAHEGIAVA TVRRVKTARE  180
VHKARLPTKP QCPRNTIAKE RVGAASGSSR GARKESLLVV VEASSVGVRV RRGRKETAAN  240
HWRTRAHTAP HTRSVILRAA PPLLSPLLAS LSPSYAALNS LFHSLLSPAK RGQRGRAGKI  300
ATTLPQQGSE AQQLAAMDTG GSGGGGGDDV HGLKFGKKIY FEQDSTAGGS REAAGGGRKG  360
KSAAAGSSGG PASTAPTAAG AVAAATPPRA ATPPRCQVEG CGVDLSGAKP YYCRHKVCCI  420
HAKTPVVVVA GIEQRFCQQC SSCRRRLAGH NERRRRPPPG PLNSRFGRLA SSFQEPGRFR  480
SFLLDFSYPR VSSGAMDAWP GVQPGDRMSS AIQWQGNHDQ LRPRSGAVAG YGDHAYIGPG  540
GSVAGTSSMH PAFELPHGGC VAGVATDSCC ALSLLSTQPW DSTQSGSHHH RSPAMSTASA  600
FEGSNPVPVS PSVMASSYAA ASTWSGSRVH ESARNLHHHH PLSQEGDLHM VHPGSVHHGH  660
FSGELELALQ GSGEPSNPPQ VDHGSSGAFG HSSNAVNCAP PPPLHLPHRC FPSPETRPGA  720
SPSPPLARFV QLPSAAVSEP LLGIPSSPVF ASSLRPVDEK TLTRPSGKLR QRHCGHVEGG  780
AERGEERAIT NELEKDDGLE NCVPSVRYAI WWLIRGIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-17	396	456	11	84	squamosa promoter binding protein-like 4

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2527	37	87