PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01555.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | AP2 | ||||||||
Protein Properties | Length: 243aa MW: 25762.7 Da PI: 6.4062 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.4 | 2.7e-11 | 89 | 145 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++ k++g+++A+++d s+ g krk + g++ t+e+Aaka++ a++k++g Zmw_sc01555.1.g00080.1.sm.mkhc 89 SRFHGVTRLKWSGKYEAHLWDnTSQvEGrKRKGKH-GSYVTEEQAAKAHDLAALKYWG 145 789******************55558777778888.999999*************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.21E-11 | 89 | 156 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.4E-8 | 89 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-9 | 90 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-12 | 90 | 161 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.158 | 90 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-5 | 91 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.506 | 142 | 210 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-4 | 170 | 216 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-6 | 172 | 212 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-7 | 184 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-5 | 192 | 212 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MATVHPQSSS PGPTAAPPPP PPHPPAASVD PAAQADGGGE IAALDKQLAV VVGGGGGAER 60 KSGPGAGGGG GGGKLVAEAM RKYAAPRSSR FHGVTRLKWS GKYEAHLWDN TSQVEGRKRK 120 GKHGSYVTEE QAAKAHDLAA LKYWGIGPNT KLNFNVSDYE KEIDIMKAMS QDEFVAYIRR 180 RKDETEEEAA EAYDIAAIQL RGVHAVTNFD ISNYCENDLT KIEDPSEVAK LEGPSEAMKL 240 AGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977550.1 | 1e-114 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q84Z02 | 3e-41 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A3L6RDA8 | 1e-113 | A0A3L6RDA8_PANMI; AP2-like ethylene-responsive transcription factor AIL1 | ||||
STRING | Si010747m | 1e-113 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7864 | 35 | 48 |
Publications ? help Back to Top | |||
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