PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01553.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 386aa MW: 41351.9 Da PI: 8.3946

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01553.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	69	128	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt GGa+rnvPvG+grrknk++ Zmw_sc01553.1.g00170.1.sm.mk 69 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTDGGAMRNVPVGAGRRKNKNA 128 78999****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	58	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.1E-32	70	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
DLQLSGGSSS GSIESDATKE NNTRQQQDTS DPSPQPEVVD AEDPKSSPRQ QPGADRDEAN 60 DRKEKLRKPD KVLPCPRCNS MDTKFCYFNN YNVNQPRHFC KNCQRYWTDG GAMRNVPVGA 120 GRRKNKNALA ASYSFLQRVR AAAMPAGGGP LNTNGTVLSF GGGNHQSVGP CSEGSSNRDD 180 RNMSGTKDHV AVSNPANGVQ HPANMNGAPM WPPYSCAPIP SHRPAYYPPP GIAIPIQPVA 240 PGYWGCMVLG GWNLPWAPVP SPTSQGLSSP TSAPSVSSGA DSLTVLGKHA RPEGDEGRSH 300 GSGKVWAPKT IRIDDADEVA KSSIWSLIGI KGDKKNADMD GRKQHGTVFE PKHDAKTAEQ 360 EMITSSPHLH ANPVALTRLL TFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

DLQLSGGSSS GSIESDATKE NNTRQQQDTS DPSPQPEVVD AEDPKSSPRQ QPGADRDEAN  60
DRKEKLRKPD KVLPCPRCNS MDTKFCYFNN YNVNQPRHFC KNCQRYWTDG GAMRNVPVGA  120
GRRKNKNALA ASYSFLQRVR AAAMPAGGGP LNTNGTVLSF GGGNHQSVGP CSEGSSNRDD  180
RNMSGTKDHV AVSNPANGVQ HPANMNGAPM WPPYSCAPIP SHRPAYYPPP GIAIPIQPVA  240
PGYWGCMVLG GWNLPWAPVP SPTSQGLSSP TSAPSVSSGA DSLTVLGKHA RPEGDEGRSH  300
GSGKVWAPKT IRIDDADEVA KSSIWSLIGI KGDKKNADMD GRKQHGTVFE PKHDAKTAEQ  360
EMITSSPHLH ANPVALTRLL TFQEGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983151.1	1e-161	cyclic dof factor 1
TrEMBL	K4AA81	1e-160	K4AA81_SETIT; Uncharacterized protein
STRING	Si035787m	1e-161	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93