PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01544.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 1155aa    MW: 125416 Da    PI: 8.1318
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01544.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.21.8e-1115198692374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaal 81 
                                    +lLl+cAe v++++l  a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lp+ + +  +  s+++aa+
  Zmw_sc01544.1.g00110.1.am.mk 519 LTLLLQCAESVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPAASPAAARlNSRVAAAF 599
                                   579************************************************************7666655554999999** PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162
                                   ++f+ +sP++kfsh+taNqaI ea+e+e+r          GlQWp L++ LasRp+gpp++++Tg+g+    s e le+tg
  Zmw_sc01544.1.g00110.1.am.mk 600 QVFNGISPFVKFSHFTANQAIQEAFEREDR----------GLQWPGLFHILASRPGGPPRVKLTGLGA----SMEVLEATG 666
                                   ****************************86..........****************************....********* PP

                          GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                                   +rL++fA +lg+pfef + va++  ++++e+L v ++Ea+aV++ +  h+l+d ++s ++    +L+l+++l Pkvv++ve
  Zmw_sc01544.1.g00110.1.am.mk 667 KRLSDFALTLGLPFEFCA-VAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVE 740
                                   ******************.7*************************9..999999999999....***************** PP

                          GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                                   q+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r  + + +++Wre+l ++GF
  Zmw_sc01544.1.g00110.1.am.mk 741 QDLSH-SGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARSGDVK-FGSWREKLAQSGF 819
                                   *****.899****************************************************988887.************* PP

                          GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   ++++l  +aa+qa+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  Zmw_sc01544.1.g00110.1.am.mk 820 RAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 869
                                   *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.399492849IPR005202Transcription factor GRAS
PfamPF035146.3E-109519869IPR005202Transcription factor GRAS
PfamPF046783.3E-509861144IPR006769Coiled-coil domain containing protein 109, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 1155 aa     Download sequence    Send to blast
MRITQLCIAI ALCKVVDRWS PQLRTAFVYA LQEPSCIVFV VEKGSRSTME RPSCARPRSA  60
WKWGSRRSER RPARNAMAAL ASMAVSGWLK RRDPFASSEN GNEATHARQD TTGKPGSRST  120
MHHPKACSCS YSYSHAASRV KLLLTRPSSM GAIGWSGHLF FTASSEPTSA QRPPLTLTHH  180
SLVYSTTTIT TTPQRAACSP WRLQMGSSSL LLFPSSSSAA SASPSYSSHG TPATTSASQY  240
SLLPPLPETS SSSSAQQDHQ LLLHYLHLDD HHQQQLAMVR KRPAPADMDL PPPPRRHVTG  300
DLSDVTAAAG APQPPSSASA QLPALPTQLQ LPAFGQLHAG EVDVAPAQVV QQPGDVTTAS  360
TAALVDGIIR DIIGSSGAAV SVTQLIQNVR EIIQPCNPGL ASLLELRLRS LLAADPAALP  420
PPPHQHPTLI HHHHHHTAPP TAAPGVAALP PPHHPPPALP EPTQCQEEPN PAPQSPKPPT  480
AEETAAAAAA AAAAAAAAAK ERKEEQLRKQ RDEEGLHLLT LLLQCAESVN ADNLDDAHQT  540
LLEIAELATP FGTSTQRVAA YFAEAMSARL VSSCLGLYAP LPAASPAAAR LNSRVAAAFQ  600
VFNGISPFVK FSHFTANQAI QEAFEREDRG LQWPGLFHIL ASRPGGPPRV KLTGLGASME  660
VLEATGKRLS DFALTLGLPF EFCAVAEKAG NVDPEKLGVT RREAVAVHWL HHSLYDVTGS  720
DSNTLWLIQR LAPKVVTMVE QDLSHSGSFL ARFVEAIHYY SALFDSLDAS YGEDSPERHV  780
VEQQLLSREI RNVLAVGGPA RSGDVKFGSW REKLAQSGFR AASLAGSAAA QASLLLGMFP  840
SDGYTLVEEN GALKLGWKDL CLLTASAWRP IQPAGRPTTM WRAAASRLLR PRHRPASTST  900
STSTAATALL LHARLFSPPA PSPRGRPAQA EASELEVTPA EARRLLRLVG VEALKRRLRD  960
GPDEVLGYAE LLDACVEAGA ARTLAEAEAL ARALDDAGVV LLFRDKAYLH PEKVVDLVRS  1020
AMPLTLEPEK NDPRKEEFKQ LQERKEEIDK LAHKQVRRIL WSGLGFFMCQ VGLFFRLTFW  1080
EFSWDVMEPV AFFTTASGLL VGYAYFLITS RDPTYQDFME RLFSSRQRKL CAMHKFDMER  1140
YLELQKQCKC PLEGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.05028703380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807416.10.0protein SCARECROW-like
SwissprotA2ZAX50.0SCR1_ORYSI; Protein SCARECROW 1
TrEMBLA0A2T7E4L00.0A0A2T7E4L0_9POAL; Uncharacterized protein
STRINGOS11T0124300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122