PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01542.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 543aa MW: 56138.3 Da PI: 6.8889

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01542.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.3	1.3e-34	181	275	2	82
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............sss 68 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l + + Zmw_sc01542.1.g00050.1.am.mk 181 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKEAIDKLEVLpawqptatatnaaaAAA 261 79**************************************************************66554443333222111 PP TCP 69 saseceaesssssa 82 ++s++ ++s ++s+ Zmw_sc01542.1.g00050.1.am.mk 262 PSSSTHPDSAENSD 275 11111111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.5E-32	181	277	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.319	183	241	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MRIAKVAAAA VAAANQAGDL DPRHQHRVAH GGDGAGGGGG EADEQQHHHQ RLLQLHQEGQ 60 DQEPPSVPVF QLQHMQAAAL RQPASSAEYA LLAPMGDAGQ SHHHHHGFQP QLLSFGGVGQ 120 HHQLHQFTAQ APAAGSASHS RSRAAAAGGG GGEIVPASQS RVRSGGGEIV AVQGGHIVRS 180 TGRKDRHSKV CTARGPRDRR VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKNAKEAIDK 240 LEVLPAWQPT ATATNAAAAA APSSSTHPDS AENSDDQAQA ITVAHTGFDF PSGAAGASGG 300 GGTGFLPSSL DSDSIADTIK SFFPMGGTGG GEASSSTAGA QSSAMSFQSY TPDLLSRTGS 360 HNQELRLSLQ SLPDPPMFQH QHPQPEHDRS HGHGGNGSAQ QALFPGAGSY SFGGGAMWGA 420 EPAQSQRLVP WNVPDPGGGY LFNVSQQAAH MQAAAAAAAL GGQSQFLFQR GPLQSSNQPS 480 DRGWPETVEA DNPMSAIGFA PGVGFSGFRI PARMQGEEEH NGGGGGSGEK PPPPPSVSSA 540 SHR

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MRIAKVAAAA VAAANQAGDL DPRHQHRVAH GGDGAGGGGG EADEQQHHHQ RLLQLHQEGQ  60
DQEPPSVPVF QLQHMQAAAL RQPASSAEYA LLAPMGDAGQ SHHHHHGFQP QLLSFGGVGQ  120
HHQLHQFTAQ APAAGSASHS RSRAAAAGGG GGEIVPASQS RVRSGGGEIV AVQGGHIVRS  180
TGRKDRHSKV CTARGPRDRR VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKNAKEAIDK  240
LEVLPAWQPT ATATNAAAAA APSSSTHPDS AENSDDQAQA ITVAHTGFDF PSGAAGASGG  300
GGTGFLPSSL DSDSIADTIK SFFPMGGTGG GEASSSTAGA QSSAMSFQSY TPDLLSRTGS  360
HNQELRLSLQ SLPDPPMFQH QHPQPEHDRS HGHGGNGSAQ QALFPGAGSY SFGGGAMWGA  420
EPAQSQRLVP WNVPDPGGGY LFNVSQQAAH MQAAAAAAAL GGQSQFLFQR GPLQSSNQPS  480
DRGWPETVEA DNPMSAIGFA PGVGFSGFRI PARMQGEEEH NGGGGGSGEK PPPPPSVSSA  540
SHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-20	188	241	1	54	Putative transcription factor PCF6
5zkt_B	1e-20	188	241	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310872.1	0.0	transcription factor PCF5
Refseq	XP_021310873.1	0.0	transcription factor PCF5
Swissprot	A2WM14	0.0	PCF5_ORYSI; Transcription factor PCF5
TrEMBL	A0A3L6R0N0	0.0	A0A3L6R0N0_PANMI; Uncharacterized protein
STRING	AC205574.3_FGP006	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5839	33	55