PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01536.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 250aa MW: 27862.3 Da PI: 6.3477

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01536.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.5	1.3e-49	23	155	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrk 74 pGfrFhPtd+elv +yLk+kve+k +++ ++ike+d+yk++PwdLp+ + a+ekewyfF+ r +ky+++ r+ Zmw_sc01536.1.g00150.1.am.mk 23 FPGFRFHPTDQELVGFYLKRKVERKGFSI-DIIKEIDVYKHDPWDLPSeawpvvlaQGGAGEKEWYFFCLRGRKYRNSIRP 102 69*************************.99**********95589988765556899************** PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 nr+t sg+Wkatg dk++++ +ge vglkk+Lv+y g+a kg+ktdW+mhe+rl Zmw_sc01536.1.g00150.1.am.mk 103 NRVTGSGFWKATGIDKPIHD-GGECVGLKKSLVYYVGSAGKGTKTDWMMHEFRL 155 ****************.9****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	48.062	22	175	IPR003441	NAC domain
SuperFamily	SSF101941	4.58E-52	22	159	IPR003441	NAC domain
Pfam	PF02365	4.1E-25	24	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEKKPMEESG STGVGGNEDD LVFPGFRFHP TDQELVGFYL KRKVERKGFS IDIIKEIDVY 60 KHDPWDLPSE AWPVVLAQGG AGEKEWYFFC LRGRKYRNSI RPNRVTGSGF WKATGIDKPI 120 HDGGECVGLK KSLVYYVGSA GKGTKTDWMM HEFRLRAATS SVDFHDAVIF KSTTTDLSEA 180 HHATLHCQPF QLHGFHEVSP EEVTETKTSA TVGTSSPSAS GWSELTSFVP DAGSTCWDEL 240 GRILEISPRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-48	24	155	22	145	NAC domain-containing protein 19
3swm_B	6e-48	24	155	22	145	NAC domain-containing protein 19
3swm_C	6e-48	24	155	22	145	NAC domain-containing protein 19
3swm_D	6e-48	24	155	22	145	NAC domain-containing protein 19
3swp_A	6e-48	24	155	22	145	NAC domain-containing protein 19
3swp_B	6e-48	24	155	22	145	NAC domain-containing protein 19
3swp_C	6e-48	24	155	22	145	NAC domain-containing protein 19
3swp_D	6e-48	24	155	22	145	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443628.1	4e-96	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	1e-70	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1E5WKN5	1e-101	A0A1E5WKN5_9POAL; Transcription factor JUNGBRUNNEN 1
STRING	Sb08g022560.1	1e-95	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]