PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01534.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 622aa    MW: 68540.5 Da    PI: 6.1393
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01534.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.5e-2173129157
                                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                     +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Zmw_sc01534.1.g00070.1.sm.mkhc  73 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 129
                                     688999************************************************995 PP
2START206.98.2e-652714921206
                                     HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS
                           START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 
                                     ela +a++elv++a+++ep+W         e +n++e+ + f+++ +      ++ea+r+s+vv+m++a lve+l+d++
  Zmw_sc01534.1.g00070.1.sm.mkhc 271 ELAVTAMEELVRMAQVDEPLWNAPGldgsaETLNEEEYARMFPQGLGpkqygLKSEASRDSAVVIMTHASLVEILMDVN 349
                                     57899****************987788888************998779******************************* PP

                                     GCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS-- CS
                           START  70 eqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkpp 137
                                      q+ + +     +a+tlev+s+g      galq+m+ e+q++splvp R+++fvRy++q ++g+w++vdvS+ds ++ +
  Zmw_sc01534.1.g00070.1.sm.mkhc 350 -QYATVFSsivsRAATLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDSLRPSS 427
                                     .88888888888****************************************************************965 PP

                                     .-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                           START 138 esssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                         v +++++pSg+li++++ng+skvtwvehv++++r++h +++ lv+sgla+ga++wv tl+rqce+
  Zmw_sc01534.1.g00070.1.sm.mkhc 428 ----VLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHDIYKLLVNSGLAFGARRWVGTLDRQCER 492
                                     ....8**************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.46E-2059130IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-2359131IPR009057Homeodomain-like
PROSITE profilePS5007117.44370130IPR001356Homeobox domain
SMARTSM003892.3E-1971134IPR001356Homeobox domain
PfamPF000461.1E-1873128IPR001356Homeobox domain
CDDcd000869.09E-2073130No hitNo description
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
PROSITE profilePS5084842.295262495IPR002913START domain
SuperFamilySSF559612.2E-35263494No hitNo description
CDDcd088751.61E-124266491No hitNo description
SMARTSM002341.9E-60271492IPR002913START domain
PfamPF018524.6E-54272492IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-6332488IPR023393START-like domain
SuperFamilySSF559619.62E-9513598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MLDNQQFQQA LQQQQQHLLE PIPATTAESG DNMMRGRASD PLGDEFESKS GSENADGVSV  60
DDLQDPSQPP NKKKRYHRHT QHQIQELEAF FKECPHPDDK QRKELSRELG LEPLQVKFWF  120
QNKRTQMKNQ YERQENSQLR AENEKLRAEN MRYKEALSSA SCPNCGGPAA LGEMSFDEHH  180
LRVENARLRE EIDRISAIAA KYVGKPMVSF PVMSSPLAIT RAGASPLDLG VGAAYGAGAA  240
NIFGGVAAGA GAGELLRGAL HSDADKPVIV ELAVTAMEEL VRMAQVDEPL WNAPGLDGSA  300
ETLNEEEYAR MFPQGLGPKQ YGLKSEASRD SAVVIMTHAS LVEILMDVNQ YATVFSSIVS  360
RAATLEVLST GVAGNYNGAL QVMSVEFQVP SPLVPTRESY FVRYCKQNSD GTWAVVDVSL  420
DSLRPSSVLK CRRRPSGCLI QEMPNGYSKV TWVEHVEVDD RSVHDIYKLL VNSGLAFGAR  480
RWVGTLDRQC ERLASVMASN IPTSDIGVIT STEGRKSMLK LAERMVISFC GGVTASAAHQ  540
WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV LNAATSFWLP VPPKRVFDFL RDESSRSEAS  600
IRSPCMLMIE CIHPYIHAHT RY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976894.10.0homeobox-leucine zipper protein ROC2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A1E5WHW10.0A0A1E5WHW1_9POAL; Homeobox-leucine zipper protein ROC2
STRINGSi009409m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]