PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01533.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

BBR-BPC

Protein Properties

Length: 342aa MW: 37835.8 Da PI: 10.0399

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01533.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	386.8	3.3e-118	16	342	1	301
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkala 68 md+ g+re r+++ +y+ p+++lk++ +++++++++e+d++irer++al+ekkaa+aerd+af+qrd+a+a Zmw_sc01533.1.g00050.1.sm.mkhc 16 MDNFGHREngRQRPdQYKamhtqwmmPQRQLKDHHSMNMLALMNEKDSAIRERDHALAEKKAAIAERDVAFAQRDAAMA 94 99**9999*9999*9999889********************************************** PP GAGA_bind 69 ernkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpie 138 ern+a+verdn+l+al+lv+ + + +++ ++ lsgtk++++++qls+ ql+d +++ +re++++ea+pi+ Zmw_sc01533.1.g00050.1.sm.mkhc 95 ERNAAIVERDNALAALELVRMNGYntnNGNGFHQGPLSGTKNTHHHDQLSHvqsssLQLADAPYDhAREMHISEAYPIS 173 ************9988766555588899999*********999899999****9********* PP GAGA_bind 139 eaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.er.....skaekksidlvlngvslDestlPvP 211 +a+ ++ + kk++k+ ++ +p+++ + k++++++k+ +sa ++ sk+e+k++dl+ln+vs+Dest+P+P Zmw_sc01533.1.g00050.1.sm.mkhc 174 TAPGSVGKGKKPRKNLSQPSPLKRPSGVLCKTKKTNWKNGGLSSAGgDSarasvSKNEWKDQDLGLNQVSYDESTMPAP 252 **********************97777777777777766655333567779******************** PP GAGA_bind 212 vCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290 +CsCtG+lrqCYkWGnGGWqS+CCt++iS+yPLP++++rr+aR++grKmS+gaf+klL++LaaeG+dls+pvDLkdhWA Zmw_sc01533.1.g00050.1.sm.mkhc 253 ACSCTGKLRQCYKWGNGGWQSSCCTMSISMYPLPAMPNRRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWA 331 *************************************************************************** PP GAGA_bind 291 kHGtnkfvtir 301 kHGtn+++tir Zmw_sc01533.1.g00050.1.sm.mkhc 332 KHGTNRYITIR 342 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.9E-157	16	342	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	6.7E-96	16	342	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
VIPSGLISWV QADVIMDNFG HRENGRQRPD QYKAMHTQWM MPQRQLKDHH SMNMLALMNE 60 KDSAIRERDH ALAEKKAAIA ERDVAFAQRD AAMAERNAAI VERDNALAAL ELVRMNGYNT 120 NNGNGFHQGP LSGTKNTHHH DQLSHVQSSS LQLADAPYDH AREMHISEAY PISTAPGSVG 180 KGKKPRKNLS QPSPLKRPSG VLCKTKKTNW KNGGLSSAGG DSARASVSKN EWKDQDLGLN 240 QVSYDESTMP APACSCTGKL RQCYKWGNGG WQSSCCTMSI SMYPLPAMPN RRHARMGGRK 300 MSGGAFTKLL SRLAAEGHDL STPVDLKDHW AKHGTNRYIT IR

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

VIPSGLISWV QADVIMDNFG HRENGRQRPD QYKAMHTQWM MPQRQLKDHH SMNMLALMNE  60
KDSAIRERDH ALAEKKAAIA ERDVAFAQRD AAMAERNAAI VERDNALAAL ELVRMNGYNT  120
NNGNGFHQGP LSGTKNTHHH DQLSHVQSSS LQLADAPYDH AREMHISEAY PISTAPGSVG  180
KGKKPRKNLS QPSPLKRPSG VLCKTKKTNW KNGGLSSAGG DSARASVSKN EWKDQDLGLN  240
QVSYDESTMP APACSCTGKL RQCYKWGNGG WQSSCCTMSI SMYPLPAMPN RRHARMGGRK  300
MSGGAFTKLL SRLAAEGHDL STPVDLKDHW AKHGTNRYIT IR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001141822.1	0.0	BBR/BPC transcription factor
Refseq	XP_008658294.1	0.0	BBR/BPC transcription factor isoform X1
Swissprot	Q5VSA8	0.0	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A3L6DC17	0.0	A0A3L6DC17_MAIZE; Barley B recombinant-like protein D
STRING	GRMZM2G118690_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6226	37	56

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]