PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01522.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 319aa    MW: 34162.4 Da    PI: 9.3736
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01522.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-193796357
                                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                   R+++tkeq+ +Le l+e+  r+psae+++++A++l     ++ ++V++WFqN++a++++
  Zmw_sc01522.1.g00110.1.am.mk 37 ARWNPTKEQVAVLEGLYENgVRTPSAEQIQHIAARLrdhgPIEAKNVFYWFQNHKARDRQ 96
                                  6*****************99******************999****************996 PP
2Wus_type_Homeobox107.48.6e-353798465
             Wus_type_Homeobox  4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                  +RW+Pt+eQ+ +Le ly++G+rtP++e+iq+i+a+L+ +G ie kNVfyWFQN+kaR+rqkq
  Zmw_sc01522.1.g00110.1.am.mk 37 ARWNPTKEQVAVLEGLYENGVRTPSAEQIQHIAARLRDHGPIEAKNVFYWFQNHKARDRQKQ 98
                                  7***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.0E-534101IPR001356Homeobox domain
PfamPF000462.5E-173796IPR001356Homeobox domain
SuperFamilySSF466895.13E-1337104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-93796IPR009057Homeodomain-like
CDDcd000865.43E-83898No hitNo description
PROSITE profilePS5007110.6414297IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
METPQGGVHG EAAGAGSPSD ARVSPPLSPA SAALLNARWN PTKEQVAVLE GLYENGVRTP  60
SAEQIQHIAA RLRDHGPIEA KNVFYWFQNH KARDRQKQKQ ESFAYFTRLL RRTPPLPVII  120
RPAGPPYPHL GRVPASPLVL TMAPPAAAAC NNGGDGGGNH VMYRAPYYMP PPPPPPPPEA  180
SAANAGYYNL QQAHHRAVMY PRMDITQDKQ MHQAGMYHAT PYGPSHVAPA KRGCADGGAS  240
ADQHAGRSRE TLELFPLRPT FVLPDNKARG AASLTSPAQL TASASFSGGE SESLVDSPKS  300
DAVAPLPFYD FFGLQSAGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814413.11e-74WUSCHEL-related homeobox 5-like
TrEMBLA0A2T7DEM51e-78A0A2T7DEM5_9POAL; Uncharacterized protein
STRINGSi004427m1e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548