PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01514.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 322aa    MW: 35542.6 Da    PI: 6.0538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01514.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.7e-14116167155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er RR+++N+ ++ Lr+l+P +   ++++ + a+i+  A++Y+++L+
  Zmw_sc01514.1.g00040.1.sm.mk 116 QRMTHIAVERHRRRQMNEYLAVLRSLMPAS---YAQRGDQASIVGGAINYVRELE 167
                                   79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.85E-13114171No hitNo description
Gene3DG3DSA:4.10.280.104.6E-14114169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.923115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-17115180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MALEAVVYPQ QAQGHFDYGR GDSSYATWSS WCEYRSGSGY ADAEPCAGEW DPALLASLVQ  60
NAEGWWEEPG SDGTSPEREP ASAVASAPPV IQQAAAARRK RRRAKMVRNE EEIESQRMTH  120
IAVERHRRRQ MNEYLAVLRS LMPASYAQRG DQASIVGGAI NYVRELEHIL QSLEVQKSLK  180
NSSYKFDDGV RSPFAGFFSF PQYSTSASHG SCSSNNAHRI QAEFTATADI EATMVEGHAS  240
LKVQVQRRPR QLLRLTVGLQ QLGLTTLHLN VGTAGATAMY SFSLKVEDEC NLSSVEEIAA  300
AVHEILRRIA DEQAFVDDKS GL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198102RKRRR
298105RKRRRAKM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983211.11e-127transcription factor bHLH96
SwissprotQ9C7T45e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9JFW21e-136A0A0A9JFW2_ARUDO; Uncharacterized protein
STRINGPavir.Ib02778.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]