PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01506.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 283aa MW: 29766.6 Da PI: 8.8317 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.2 | 1.5e-30 | 24 | 127 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssss 69 aag+kdrhsk+ T++g+RdRRvRls+++a+rf+d+qd+LG+d++sk++ WL+ +a + i++l+++ + Zmw_sc01506.1.g00040.1.am.mk 24 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIRFYDVQDRLGVDQPSKAVAWLIGAAAAVIDALPSLdrssfalppavaD--- 101 6899*************************************************************5555533332221... PP TCP 70 asec.eaesssssasnsssg.........k 89 + +a++++s+++ s+g + Zmw_sc01506.1.g00040.1.am.mk 102 ---AdDAGAEVSASE-TSKGsvlslvnapA 127 ...122222222222.22223444433330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-29 | 26 | 136 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.425 | 27 | 85 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MERVVAAGME RAACKRPRAD LDAAAGGKDR HSKVVTARGL RDRRVRLSVP TAIRFYDVQD 60 RLGVDQPSKA VAWLIGAAAA VIDALPSLDR SSFALPPAVA DADDAGAEVS ASETSKGSVL 120 SLVNAPAEIA VPAAAHQTNH AVHAYSGNAG GGGAFAQPLH CAATDDDKSM RQKGPPTLAY 180 YAAQTPSPYI TPARDLGTMP QLAFLHEEQQ QQPAVVFGRG TLQSNAVAAP LWPPAQQHPC 240 LLQRFTSADA AGLPFFLGGG AAPVTSSADR RVQFWNFKQE RKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-20 | 32 | 86 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-20 | 32 | 86 | 1 | 55 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963209.1 | 1e-102 | transcription factor PCF8 | ||||
Swissprot | A2ZMR9 | 1e-68 | PCF8_ORYSI; Transcription factor PCF8 | ||||
TrEMBL | A0A3L6T289 | 1e-103 | A0A3L6T289_PANMI; Transcription factor PCF8 | ||||
STRING | Pavir.Ca02949.1.p | 1e-104 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11553 | 26 | 38 |