PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01498.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 809aa    MW: 88510.7 Da    PI: 8.0749
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01498.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12611657455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h   ErrRR+++N++f  Lr+l+P       +K++ a+iL  ++eY+k+L+
  Zmw_sc01498.1.g00010.1.am.mk 611 SHVLKERRRREKLNERFVVLRSLVPFV-----TKMDRASILGDTIEYVKQLR 657
                                   79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-30157324IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.787607656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17610679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-14611661No hitNo description
PfamPF000102.9E-10611656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-17611666IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-16613662IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MPLFPHNLQG NERNGLQVTN LRAPRNHSMR PSETCWSDCP TTQLLLEQRY IFLQSVQDKA  60
PQVFGTRDRS CEKIDGLGFR VPCSGLADGS ARHEHTDPVV FVAVSPHPTC RRCMSLLPAA  120
RAVCCSCRQV VTAKYVPCLP RVPAMVTSSG DAGEATQKAL QAVAQGTRWT YSLLWQLCPH  180
QGALVWVEGH YNGAIKTRKT VQPGGHDDDG GGEEAGSGNK AARKRSRQLR ELYDSLAGEA  240
AAAAGGGVGG GEGSSAAPAR RPCASLAPED LAETEWFYLM CASYCFPPGL GLPGKAYAIR  300
RHVWLSGANQ ADSKVFLRAI LAKVEEDIGL VQYARSIFMD QHGGHIHMVP TLSGHSTSNP  360
IVTHIDDTPL HIKWGRYTAY PNVHPHHNLN PENKRSEVED DAARFDTECV SDLEAKNEKG  420
SCWQKNFGSS EQAATPNPGS SGLMHVGVSD GARYGCSSYV DEDVDGERRE EGPGQWDLLY  480
ENLCSGYLEP SAEDQAIPPE NAHYAETVLR ILRHNADRQT ASCVKTHLTV STSSSFSRWN  540
PKRPAVDLRN VAVSECAPQR MLKSILFINV GSSRCKFREA PTSPPEARDV DGEGTSRTRR  600
GQQGQAELSA SHVLKERRRR EKLNERFVVL RSLVPFVTKM DRASILGDTI EYVKQLRRRI  660
QDLESRPRLM TDTAPRPPPA MSSHETRGYS TRAGTWTTRA AAAEPASDVI SCSTSSAAAA  720
EVQVSIIESD ALVEVRCPHR DGLLLRVLQA VHRDLRMEVT SVQASSAGGA LIAELRAKAS  780
MRTVKEVHGR RSSIAEVKRS IHLILSSSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1615620ERRRRE
2616621RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801359.10.0basic helix-loop-helix protein A
TrEMBLA0A1E5VN500.0A0A1E5VN50_9POAL; Basic helix-loop-helix protein A
STRINGSi029106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036