PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01488.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 383aa MW: 41839.4 Da PI: 4.5528 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.3e-20 | 131 | 182 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +g++GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+++++ge Zmw_sc01488.1.g00070.1.sm.mkhc 131 CGFRGVRQRT-WGKWVAEIREP---N-RaNRLWLGTFPTAEDAARAYDEAARAMYGE 182 79*****999.**********8...3.469************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.19E-31 | 131 | 189 | No hit | No description |
Pfam | PF00847 | 1.3E-13 | 131 | 182 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 132 | 195 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 132 | 190 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.471 | 132 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 133 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 133 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MTVDQKAATP SRMQQVQPLQ PGRTYGAEDT VVHDPLRKIG GRALPSNEYV LSVHQRQQED 60 APRVASDMWK KRPRRSRDGP NSVTAVIQRW AQINQELEHD PEAAKKQRKA PAKGSKKGCM 120 KGKGGPENTV CGFRGVRQRT WGKWVAEIRE PNRANRLWLG TFPTAEDAAR AYDEAARAMY 180 GELARTNFPS HVSTSTQLAP APLEVVQPVS VSSESTMTSN HSDIVSSDKP DASDISSTMN 240 SGAESLGTMP CEPKIESASL DQSADGHLVP EAGSSSAADE VFEPLEPIAN LPLGNEVFDI 300 DEMLSMMEAD PQNEGSWNTT NGGDARAGLE QPPFVDGLDA TLLENMLQSE PEPWLMSQDT 360 EMYLAGFENP DFFEGSGFPE KLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-15 | 133 | 192 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-15 | 133 | 194 | 6 | 68 | ATERF1 |
3gcc_A | 2e-15 | 133 | 194 | 6 | 68 | ATERF1 |
5wx9_A | 3e-15 | 133 | 196 | 15 | 79 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021302432.1 | 1e-139 | dehydration-responsive element-binding protein 2B-like isoform X2 | ||||
Swissprot | Q5W6R4 | 1e-75 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A1N7TB58 | 1e-159 | A0A1N7TB58_9POAL; Transcription factor DREB2.3 | ||||
STRING | Traes_1AL_A9FB6BF52.1 | 1e-119 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11515 | 30 | 37 |
Publications ? help Back to Top | |||
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