PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01466.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 365aa MW: 40659.3 Da PI: 7.0748

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01466.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.5e-15	14	89	1	46
TSSS-HHHHHHHHHHHHHTTTT...............................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...............................tWktIartmgkgRtlkqcksrwqk 46 +g+W++eEd +l++ ++++G+g W+ Ia+ ++ gRt++++k++w++ Zmw_sc01466.1.g00010.1.am.mk 14 KGPWSPEEDAKLKEFIEKHGTGgnwialpekagqqpnikhgefteledrvicsMWSIIASQLP-GRTDNDIKNYWNT 89 79***********************************************************.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-21	5	35	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.273	9	95	IPR017930	Myb domain
SuperFamily	SSF46689	1.03E-12	11	87	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-14	13	93	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-12	14	89	IPR001005	SANT/Myb domain
CDD	cd00167	5.56E-10	16	91	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.9E-21	67	95	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPEKAGQQPN IKHGEFTELE 60 DRVICSMWSI IASQLPGRTD NDIKNYWNTK LKKKLLGSST VTAPPHRTPR HQHRPLNLML 120 QHSSSSFTHP TYSGFFPHAT ASLHDPIVPA LTLPPTEDFM LGSSLAIPNA SSLLHAHGAT 180 QQQLHHHVVK EESGSMIVFG SDQQSCSSSD GRTHSRSQFS HGKELRFNGY YGYNNNGSIE 240 HDHRSLLQLQ EHHQHAHQVP VEYNYDELKQ LLMSSTTGSN LHGSSQVRDG GMEGFGSQGK 300 VTMLTAISAC EDVYLSSWSE TSCMEAKQDD HRGSAHGIEI LDAKIRAREM NRSEREEKIP 360 GVCRE

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPEKAGQQPN IKHGEFTELE  60
DRVICSMWSI IASQLPGRTD NDIKNYWNTK LKKKLLGSST VTAPPHRTPR HQHRPLNLML  120
QHSSSSFTHP TYSGFFPHAT ASLHDPIVPA LTLPPTEDFM LGSSLAIPNA SSLLHAHGAT  180
QQQLHHHVVK EESGSMIVFG SDQQSCSSSD GRTHSRSQFS HGKELRFNGY YGYNNNGSIE  240
HDHRSLLQLQ EHHQHAHQVP VEYNYDELKQ LLMSSTTGSN LHGSSQVRDG GMEGFGSQGK  300
VTMLTAISAC EDVYLSSWSE TSCMEAKQDD HRGSAHGIEI LDAKIRAREM NRSEREEKIP  360
GVCRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-13	14	95	7	108	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975125.1	1e-155	transcription factor RAX2
TrEMBL	A0A3L6Q925	1e-164	A0A3L6Q925_PANMI; Transcription factor RAX2-like
STRING	Si010627m	1e-154	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412