PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01456.1.g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 233aa MW: 25429.8 Da PI: 7.6485 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.8e-07 | 209 | 230 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e+Cr+f r G+C++ ++C+F H+ Zmw_sc01456.1.g00170.1.sm.mkhc 209 VEICRDFKR-GECNR-ASCRFYHP 230 589******.*****.*******9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.596 | 72 | 100 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.026 | 73 | 99 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 2.3 | 78 | 97 | No hit | No description |
SMART | SM00356 | 0.89 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.216 | 107 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.21 | 107 | 125 | No hit | No description |
PROSITE profile | PS50103 | 12.812 | 174 | 200 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0054 | 174 | 199 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.021 | 180 | 198 | No hit | No description |
PROSITE profile | PS50103 | 12.99 | 206 | 232 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-4 | 206 | 231 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.0029 | 211 | 230 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MASAEIPNPA PDVTHPDAAA AAAAAVPADA PVQTDATASA DAPAPAHSSY AHPHQSVTVD 60 RSLLKSIGVE DPKVKMVCRD FARGKCSRSA NECRFLHHSS VEDCAVICQD FLRGRCERKS 120 CRYSHAAAHP MPPMGNIPIQ YSDMLYMPPP PLPPLGVPMM GPPPSPPRAF ADFRNSAEVC 180 RDFLKNMCNR ESCRYLHPDT HTPATSNNVE ICRDFKRGEC NRASCRFYHP YAS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020403449.1 | 1e-94 | uncharacterized protein LOC100382535 isoform X4 | ||||
Refseq | XP_023157307.1 | 1e-94 | uncharacterized protein LOC100382535 isoform X4 | ||||
Swissprot | Q0JD07 | 7e-79 | C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28 | ||||
TrEMBL | A0A1D6EA69 | 3e-93 | A0A1D6EA69_MAIZE; Zinc finger CCCH domain-containing protein 28 | ||||
STRING | Sb06g017290.2 | 5e-88 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10904 | 19 | 22 |
Publications ? help Back to Top | |||
---|---|---|---|
|