PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01451.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 395aa    MW: 44085.6 Da    PI: 8.0867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01451.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.2e-14240284347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  Zmw_sc01451.1.g00170.1.am.mk 240 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 284
                                   8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0019127179IPR001005SANT/Myb domain
PROSITE profilePS500906.063129177IPR017877Myb-like domain
SuperFamilySSF466896.39E-10129184IPR009057Homeodomain-like
CDDcd001674.44E-5131173No hitNo description
PROSITE profilePS5129417.568233289IPR017930Myb domain
SuperFamilySSF466892.09E-17235289IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-17236287IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.9E-12237283IPR009057Homeodomain-like
SMARTSM007175.8E-13237287IPR001005SANT/Myb domain
CDDcd001673.82E-11240285No hitNo description
PfamPF002491.0E-11240284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGTRVLGPGR PAQLQLQLQL RFNDSGESGH VLPRNRQSTP HTTLDHEGDP DSCRRHKLYY  60
HHRLVHKYPF FPSAPTLSPA SALVRRTRLP FAPTGKESWM EVLPSPPATR FAAQAAGGWF  120
LQNRQPVPGV WTLEENKMFE RALASVDWDA PDRWECVASM LPGRTVADVV SHFDDLENDV  180
HFIEAGLMPL PHYGAGDDSQ SAARFTFDWD AGDLGFKRSC YVVGGKRGRG QDQERKKGVP  240
WTEEEHKLFL MGLKKYGRGD WRNISRNFVT SRTPTQVASH AQKYFIRLNS GGKDKRRSSI  300
HDITTVNLPD EDSSNPSPSP PSVLTATSTP SSGGTVMSEQ FEVIMDSKPP PPPMGQHNHF  360
LPHPYGNVKL EPHHGGLFDD SVLMQMQCGQ LQPLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-131311931173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961904.11e-163transcription factor DIVARICATA
SwissprotQ8S9H71e-74DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLK3Z8E61e-162K3Z8E6_SETIT; Uncharacterized protein
STRINGSi022816m1e-162(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]