PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01446.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 529aa MW: 55281.8 Da PI: 7.9786 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.5 | 1.4e-28 | 249 | 298 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Zmw_sc01446.1.g00060.1.sm.mk 249 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 298 9************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.4E-13 | 246 | 299 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-25 | 247 | 298 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-21 | 249 | 299 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MEASSAASPD LSLHISLPNS SAPGSGPAGG RAAAGGAGGG GVGGDPWRRL NWSTELSLSP 60 PAEPDADALP LRHRPSAAAS SSAATTSSAR MMPMPTLQPL DAGGGGGGGG ASAAPPIRGI 120 PIYNGPGGFP FLPPAAGGDH QKVRFYGSYH HPATWPSSLG STSPSPLAPG ASPLDPASAF 180 LSPAVHHHHR MLSASGRLNG MLTDTLRGYG SAGGLGGIGG HHHLHGAQPF GLGSRFMPKL 240 PAKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQVR 300 GCRPPLPLNS PKTRAFCFVY LLPFLFLFGS DKNANAVTPE LVNDGETDDG WRLAAKKLSF 360 LGEREREERE RCMMYRTVKS TDKPAASSGP ADGGSGDDEF SGAGQTASGG DNNMCARPFG 420 EHRSTSEGAA SSVGRGGDMD QSTAGNTSTR WSNSSRDPWM SLNSCNMDAH RLVDLSSPIE 480 NAEPCRSSSS QVSNQEPSSP SLEFTLGRPD WQGPPIMNEP AIEELKLKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956748.1 | 1e-162 | probable transcription factor RL9 | ||||
Swissprot | Q0J235 | 9e-77 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A3L6DY09 | 1e-166 | A0A3L6DY09_MAIZE; Putative transcription factor RL9 | ||||
STRING | Si032049m | 1e-151 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |